View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3368_high_3 (Length: 424)
Name: NF3368_high_3
Description: NF3368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3368_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 420
Target Start/End: Original strand, 925396 - 925793
Alignment:
| Q |
19 |
cttcctaggacgcatgttcaaatgtatatgcgaagtatctcatattagtca-------tgtacaatatgnnnnnnngttagaggatgtaaaatctgttta |
111 |
Q |
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| T |
925396 |
cttcctaggacgcatgttcaaatgtatatgcgaagtatctcatattagtcaatagtcatgtacaatatgtttttttgttagaggatgtaaaatctgttta |
925495 |
T |
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| Q |
112 |
aagnnnnnnngaaattacatacatatacatatgagtggagcatcgttactttaaaacgtacacatacatatactttttcaattttaaagcatctagacct |
211 |
Q |
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| T |
925496 |
aagaaaaaaagaaattacatacatat------gagtggagcatcgttactttaaaacgtacacatacatatactttttcaattttaaagcatcta----- |
925584 |
T |
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| Q |
212 |
catagatctaaatcaatatcttaattacttgataggagattgtacgatgatatatctgaatcatggttcaattagattgtatcggacaaccaataaatta |
311 |
Q |
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| T |
925585 |
----------aatcaataccttaattacttgataggagattgtacgatgatatatctggatcatggttcaattagattgaatcggacaaccaataaatta |
925674 |
T |
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| Q |
312 |
atnnnnnnnn----------ttaaatgataaatgcaaagtgtcctctaattttgttacatatatttaatcatagttgaagatcagtagaaagaagactga |
401 |
Q |
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| T |
925675 |
ataaaataaaataaaaaaaattaaatgataaatgcaaagtgtcctttaattttgttacatatatttaatcatagttgaatatcagtagaaagaagactga |
925774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 368 - 420
Target Start/End: Original strand, 935203 - 935255
Alignment:
| Q |
368 |
aatcatagttgaagatcagtagaaagaagactgaacatgatcatatctctgct |
420 |
Q |
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| T |
935203 |
aatcatagttgaagatcagtaaaaagaagactgaacatgatcatatctctgct |
935255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 420
Target Start/End: Original strand, 928073 - 928125
Alignment:
| Q |
368 |
aatcatagttgaagatcagtagaaagaagactgaacatgatcatatctctgct |
420 |
Q |
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| T |
928073 |
aatcatagttggagatcattagaaagaacactaaacatgatcatatctctgct |
928125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 420
Target Start/End: Original strand, 938992 - 939044
Alignment:
| Q |
368 |
aatcatagttgaagatcagtagaaagaagactgaacatgatcatatctctgct |
420 |
Q |
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| T |
938992 |
aatcatagttggagatcagtagaaagaacactgaaaataatcatatctctgct |
939044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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