View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3368_high_9 (Length: 245)
Name: NF3368_high_9
Description: NF3368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3368_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 43012848 - 43012637
Alignment:
| Q |
16 |
caaaaggttgaacctttacctccacttcagaaaaggaaaaacctttcccttttaaggccagagaagggactaatgtgaagaagagaaagaacaaaatgga |
115 |
Q |
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| T |
43012848 |
caaaaggttgaacctttacctccacttcagaa--ggaaaaacctttccattttaaggccagagatgggactaatgtgaagaagagaaagaacaaaatgga |
43012751 |
T |
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| Q |
116 |
agaagctgtcaaggtagctcagtttgaggtacagaggacaactcgtcaatgcaacaaaaatcaacaaggtgtgagtagtagcagcggagccaaaaaatct |
215 |
Q |
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| T |
43012750 |
agaagctgtcaaggtagctcagtttgaggtacagaggacaactcgtcaatgcaacaaaaatcaacaaggtgtgagtagtagcagcggagccaaaaaatct |
43012651 |
T |
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| Q |
216 |
aagaaagcagtgaa |
229 |
Q |
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|||||||||||||| |
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| T |
43012650 |
aagaaagcagtgaa |
43012637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 18221133 - 18220918
Alignment:
| Q |
16 |
caaaaggttgaacctttacctccacttcagaaaaggaaaaacctttcccttttaaggccagagaagggactaatgtgaagaagagaaagaaca------- |
108 |
Q |
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||||||||||||||||||||| ||||||| ||||||| | || |||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
18221133 |
caaaaggttgaacctttacctgtgattcagaa--ggaaaaaggtgtcatttttaaggccagagtagggactattgtgaagaagagaaagaacattgaaaa |
18221036 |
T |
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| Q |
109 |
-----aaatggaagaagctgtcaaggtagctcagtttgaggtacagaggacaactcgtcaatgcaacaaaaatcaacaaggtgtgagtagtagcagcgga |
203 |
Q |
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| T |
18221035 |
agaagaaatggaagaagttgtgaaggtagctccttttgaggtacagagggtgactcgtcaatgcaacaaaaatcaacaaggtgtaagtagtagcagcgtg |
18220936 |
T |
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| Q |
204 |
gccaaaaaatctaagaaa |
221 |
Q |
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|||||||| ||||||||| |
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| T |
18220935 |
gccaaaaagtctaagaaa |
18220918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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