View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3368_low_11 (Length: 240)
Name: NF3368_low_11
Description: NF3368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3368_low_11 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 48714451 - 48714673
Alignment:
| Q |
18 |
gatattaagcgctccctctagtcttgaatataagcaaaagtaaataatgaacttcgtcaaaattaaatttgaagtaaatagattttgactttttggcctg |
117 |
Q |
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| T |
48714451 |
gatactaagcgcttcctttggtcttgaatataagcaaaagtaaataatgaacttcgtcaaaattaaatttgaagtaaatagattttgactttttggcctg |
48714550 |
T |
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| Q |
118 |
tctaccttttttcacttgtaaaagaatcggttgtttcattccttatggtttacattttgttgaattgttttgtgaaggatgtttgccgacaaggttgcag |
217 |
Q |
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| T |
48714551 |
tctaccttttttcacttgtaaaagaatcggttgtttcattccttctggtttacatttcgttgaattgttttgtgaaggatgtttgccgacaaggttgcag |
48714650 |
T |
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| Q |
218 |
caaccgggtattatgtggtggtt |
240 |
Q |
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| T |
48714651 |
caaccgggtattatgtggtggtt |
48714673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 47167782 - 47167897
Alignment:
| Q |
119 |
ctaccttttttcacttgtaaaagaatcggttgtttcattccttatggtttacattttgttgaattgttttgtgaaggatgtttgccgacaaggttgcagc |
218 |
Q |
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| T |
47167782 |
ctaccttttttcgcttacaaaagaattggctgttttattccct-tggtttacattttgttgatctgttt-gtgaaggatgtttgcagacaaggttgcagc |
47167879 |
T |
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| Q |
219 |
aaccgggtattatgtggt |
236 |
Q |
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| T |
47167880 |
aactgggtattatgtggt |
47167897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 48696719 - 48696791
Alignment:
| Q |
163 |
tggtttacattttgttgaattgttttgtgaaggatgtttgccgacaaggttgcagcaaccgggtattatgtggt |
236 |
Q |
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| T |
48696719 |
tggtttacattttgttgatctgttt-gtgaaggaatcttgccgacaaggttgcggcagcaggttattatgtggt |
48696791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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