View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3368_low_12 (Length: 232)
Name: NF3368_low_12
Description: NF3368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3368_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 29164171 - 29164025
Alignment:
| Q |
16 |
caattataagaggtttaaatactttactccgcaatctcccttgagagaga--tgnnnnnnnn--tgctagcaatagctcttggggtatttaggtaaattt |
111 |
Q |
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| T |
29164171 |
caattataagaggagcaaatactttactccgcaatcttccttgagagagagatgaaaaaaaaaatgctagcaatagctcttggggtatttaggtaaattt |
29164072 |
T |
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| Q |
112 |
ttatataccctaaagtttggttggatatagatatctataatatatgt |
158 |
Q |
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| T |
29164071 |
ttatataccctgaagtttggttggatatcgatatctataatatatgt |
29164025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 29164380 - 29164331
Alignment:
| Q |
16 |
caattataagaggtttaaatactttactccgcaatctcccttgagagaga |
65 |
Q |
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| T |
29164380 |
caattataagaggttcaaatactttactccgcaatctcccttgagagaga |
29164331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 14857163 - 14857204
Alignment:
| Q |
152 |
tatatgtacggtatataaataccgaactaaattaacctttgt |
193 |
Q |
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| T |
14857163 |
tatatgtacggtatataaataccgaactaaattagcctttgt |
14857204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 34152615 - 34152574
Alignment:
| Q |
152 |
tatatgtacggtatataaataccgaactaaattaacctttgt |
193 |
Q |
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| T |
34152615 |
tatatgtacggtatataaatgccgaactaaattaacctttgt |
34152574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 34174509 - 34174550
Alignment:
| Q |
152 |
tatatgtacggtatataaataccgaactaaattaacctttgt |
193 |
Q |
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| T |
34174509 |
tatatgtacggtatataaatgccgaactaaattaacctttgt |
34174550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 15161833 - 15161874
Alignment:
| Q |
152 |
tatatgtacggtatataaataccgaactaaattaacctttgt |
193 |
Q |
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| T |
15161833 |
tatatgtacggtatataaatgccgaactaaattaacctttgt |
15161874 |
T |
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