View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3368_low_2 (Length: 727)
Name: NF3368_low_2
Description: NF3368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3368_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 202 - 480
Target Start/End: Complemental strand, 39273276 - 39273006
Alignment:
| Q |
202 |
attccctgcaaaaacagaattgataattttcttagaccatcaccaaaaatgctaaacgaatcaaattcagtggtggtagtgatggattcgtattcatgcc |
301 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||| |
|
|
| T |
39273276 |
attccctgcaaaaacagaattgatcatttccttagaccatcaccaaaaatgctaaacgaatcaaattcaatggtggtagtgatagattcgttttcatgcc |
39273177 |
T |
|
| Q |
302 |
catccctaagaattttcctgtttcagtcttcagatatataccata-----atatgcctcaaatattcatcttatttcaattagttagtttaaactttatg |
396 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39273176 |
catcccaaagaattttcctgtttcagtcttcagatatataccataatataatatgcctcaaatattcatcttatttc-------------aaactttatg |
39273090 |
T |
|
| Q |
397 |
gtaaaaaggagggagaggtattagatcctatccaatcactttatatcattacagaatatataactaatggacatatatactcaa |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39273089 |
gtaaaaaggagggagaggtattagatcctatccaatcactttatatcattacagaatatataactaatggacatatatactcaa |
39273006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 567 - 719
Target Start/End: Complemental strand, 39272963 - 39272811
Alignment:
| Q |
567 |
gtaggaacacaatttcaacaccattcacaaacagaactgggcactttcaattccatatatataggaaatggaaaaacaaaacatcatatatcgcggttgg |
666 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39272963 |
gtaggaacacaatttcaacaccattcacaaacagaactgggcactttcaattccatatatataggaaatggaaaaacaaaacatcatatatcgcggttgg |
39272864 |
T |
|
| Q |
667 |
tgtccttccaactcctacaattaccaagtccatgaagtaactgagcctatgct |
719 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39272863 |
tgtccttccaactcctacaattaccaagtccatgaagtaactgagcctatgct |
39272811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 39273426 - 39273353
Alignment:
| Q |
125 |
gtctaaaataattttgtcacgtcaaaaatttccaattaagttcc-tttccatataccattcttgtttccaataa |
197 |
Q |
| |
|
||||||||||||||||| | |||||| ||||||||||| |||| |||| ||||||||||||||| |||||||| |
|
|
| T |
39273426 |
gtctaaaataattttgtggcttcaaaagtttccaattaatttccttttctatataccattcttgtgtccaataa |
39273353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University