View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3368_low_5 (Length: 388)
Name: NF3368_low_5
Description: NF3368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3368_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 8e-77; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 129 - 318
Target Start/End: Original strand, 35455549 - 35455737
Alignment:
| Q |
129 |
gaggagtaagagagtgaagagacaaagagaggtagagaatagtgtttgtccaaatgagtgaagcaatgcaatatttagaacatatatgtacgaaatgtta |
228 |
Q |
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| T |
35455549 |
gaggagtaagagagtgaagagaca--gagatgtagagaata-tgtttgtccaaatgagtgaagcaatgcaatatttataacaaatatgtacgaaatgtta |
35455645 |
T |
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| Q |
229 |
aatcaatgtggcgccgta--atgtggagattaataggaagccgtgttctaaattctccatgtaaggtttgtttgtaggttttgatccaattt |
318 |
Q |
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| T |
35455646 |
aatcaatgtggcgccgtaggatgtggagattaataggaagccgtgttctaaattctccatgtaaggtttgtttgtaggttttgattcaattt |
35455737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 35455415 - 35455482
Alignment:
| Q |
1 |
attatttcacaaacatggtcattggctcgaactcgacattacagacttcataaagaaacacacatagg |
68 |
Q |
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| T |
35455415 |
attatttcacaaacatggtcattggctcgaactcgacattacagacttcataaagaaacacacatagg |
35455482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 315 - 374
Target Start/End: Original strand, 35456563 - 35456622
Alignment:
| Q |
315 |
atttatgtatataactaaattcgccaacccgtatgacagacatgtcttatatgttattat |
374 |
Q |
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| T |
35456563 |
atttatgtatataactaaattcgccaacccgtatgacacgcgggtcttatatgttattat |
35456622 |
T |
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