View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3368_low_9 (Length: 250)
Name: NF3368_low_9
Description: NF3368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3368_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 48715022 - 48714908
Alignment:
| Q |
16 |
atccagcagctccaatagtagaaatacctttacttttcaaggcttcaattatgggttgtgaaacttcaaaacctgtctcctataaatataatacatgcaa |
115 |
Q |
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| T |
48715022 |
atccagcagctccaatagtagaaatacctttacttttcaaggcttcaattatgggttgtgaaacttcaaaacctgtctcctataaatataatacatgcaa |
48714923 |
T |
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| Q |
116 |
gtaccagaaaattat |
130 |
Q |
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| T |
48714922 |
gtaccagaaaattat |
48714908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 48702602 - 48702507
Alignment:
| Q |
13 |
aatatccagcagctccaatagtagaaatacctttacttttcaaggcttcaattatgggttgtgaaacttcaaaacctgtctcctataaatataata |
108 |
Q |
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| T |
48702602 |
aataaccagcagctccaatagcagaaacacctttactttttaaggcttcaattattggttgggaagcttcaaaacctttgtcctgtaaatgtaata |
48702507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 48688301 - 48688231
Alignment:
| Q |
36 |
gaaatacctttacttttcaaggcttcaattatgggttgtgaaacttcaaaacctgtctcctataaatataa |
106 |
Q |
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| T |
48688301 |
gaaacacctttactttttatggcttcaattatgggttttgcatcttcaaaacctttgtcctattaatataa |
48688231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Complemental strand, 48714901 - 48714867
Alignment:
| Q |
216 |
ttataaataaatgtagaaggcacaataacattaaa |
250 |
Q |
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| T |
48714901 |
ttataaataaatgtggaaggcacaataacattaaa |
48714867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 32150407 - 32150450
Alignment:
| Q |
27 |
ccaatagtagaaatacctttacttttcaaggcttcaattatggg |
70 |
Q |
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| T |
32150407 |
ccaatagcagaaacacctttactttttaaggcttcaattatggg |
32150450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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