View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3369_high_3 (Length: 249)
Name: NF3369_high_3
Description: NF3369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3369_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 6774836 - 6775076
Alignment:
| Q |
1 |
ccttatccctcagcttcatcaaatcagttttattctcaagttgaacattaacagacgagtatctttcaagcttctgacgttgcttctgaagctttgattg |
100 |
Q |
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| T |
6774836 |
ccttatccctcagcttcatcaaatcagttttattctcaagttgaacattaacagacgagtatctctcaagcttctgacgttgcttctgaagctttgattg |
6774935 |
T |
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| Q |
101 |
gtatcttggaaaagacaaaaagttcttccaagtaagcttattgctttttgttacaatctgttcccattctcttaagagagtctctagtctctctatctct |
200 |
Q |
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| T |
6774936 |
gtatcttggaaaagacaaaaagttcttccaagtaagcttattgctttttgttacaatctgttcccattctcttaagagagtctctagtctctctatctct |
6775035 |
T |
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| Q |
201 |
tctttaggtcgatccgacaaatcattgacatcattcatctc |
241 |
Q |
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| T |
6775036 |
tctttaggtcgatccgacaaatcattgacatcattcatctc |
6775076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6762414 - 6762636
Alignment:
| Q |
1 |
ccttatccctcagcttcatcaaatcagttttattctcaagttgaacattaacagacgagtatctttcaagcttctgacgttgcttctgaagctttgattg |
100 |
Q |
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||||| ||||||||| |||||||||| |||||||||| | ||| ||||||||| | ||| ||| ||||||||| |||||||| ||||||| ||| |
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| T |
6762414 |
ccttaaccctcagctccatcaaatcatttttattctcgacttgcacattaacattcaagtgtctctcaagcttcgcgtcttgcttcttaagctttccttg |
6762513 |
T |
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| Q |
101 |
gtatcttggaaaagacaaaaagttcttccaagtaagcttattgctttttgttacaatctgttcccattctcttaagagagtctctagtctctctatctct |
200 |
Q |
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| T |
6762514 |
gtaacctggaaaaaaataaaagttcttccaagtaagcttcttgctttttccaacaagctcttcaccttctcttacgagagcctctaatcttcctatctct |
6762613 |
T |
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| Q |
201 |
tctttaggtcgatccgacaaatc |
223 |
Q |
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| T |
6762614 |
tcttttggtcgatccaacaaatc |
6762636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 6717587 - 6717632
Alignment:
| Q |
11 |
cagcttcatcaaatcagttttattctcaagttgaacattaacagac |
56 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
6717587 |
cagcttgatcaaatcttttttattctcaagttgaacattaacagac |
6717632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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