View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3369_high_4 (Length: 242)
Name: NF3369_high_4
Description: NF3369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3369_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 6774857 - 6774633
Alignment:
| Q |
1 |
ttgatgaagctgagggataaggtggatgaaattttgaagagaatggtgaattcgggtcagtttgatgggaaacaaataaggggtttgtctggtgctcctg |
100 |
Q |
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| T |
6774857 |
ttgatgaagctgagggataaggtggatgaaattttgaagagaatggtgaattcgggtcagtttgatgggaaacaaataaggggtttgtttggtgctcctg |
6774758 |
T |
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| Q |
101 |
aagagcctgaatttattggaatggatgagcctttgaataagttgaagtttgaattgatgaagaagggtgcttctgtacttgttttgactggtttgggtgg |
200 |
Q |
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| T |
6774757 |
aagagcctgaatttattggaatggatgagcctttgaataagttgaagtttgaattgatgaagaagggtgcttctgtacttgttttgactggtttgggtgg |
6774658 |
T |
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| Q |
201 |
atctggtaaaagcactcttgctaag |
225 |
Q |
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| T |
6774657 |
atctggtaaaagcactcttgctaag |
6774633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 57 - 225
Target Start/End: Original strand, 7095588 - 7095756
Alignment:
| Q |
57 |
tcagtttgatgggaaacaaataaggggtttgtctggtgctcctgaagagcctgaatttattggaatggatgagcctttgaataagttgaagtttgaattg |
156 |
Q |
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| T |
7095588 |
tcagtttgataggaatcaaataaggggtttgtgtggtgctcctgaagagcctgtatgcatgggaatggatgaacctttaaataagttgaagattgaattg |
7095687 |
T |
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| Q |
157 |
atgaagaagggtgcttctgtacttgttttgactggtttgggtggatctggtaaaagcactcttgctaag |
225 |
Q |
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| T |
7095688 |
atgaaagatggtgtttctgtgcttgttttgactggtttgggtggatctggtaaaaccactcttgctaag |
7095756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 73 - 225
Target Start/End: Complemental strand, 6725556 - 6725404
Alignment:
| Q |
73 |
caaataaggggtttgtctggtgctcctgaagagcctgaatttattggaatggatgagcctttgaataagttgaagtttgaattgatgaagaagggtgctt |
172 |
Q |
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||||| || ||||||| |||||||||| |||||||||||||||||||||||| | ||| || ||| |||||||| |||||||||||||| | ||||||| |
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| T |
6725556 |
caaattagaggtttgtatggtgctcctcaagagcctgaatttattggaatggttaagcaatttaatgagttgaaggttgaattgatgaaggatggtgctt |
6725457 |
T |
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| Q |
173 |
ctgtacttgttttgactggtttgggtggatctggtaaaagcactcttgctaag |
225 |
Q |
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| T |
6725456 |
ctgtgcttgttttgactggtttgggtggatctggtaaaaccactcttgctaag |
6725404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 31 - 225
Target Start/End: Complemental strand, 6717550 - 6717356
Alignment:
| Q |
31 |
attttgaagagaatggtgaattcgggtcagtttgatgggaaacaaataaggggtttgtctggtgctcctgaagagcctgaatttattggaatggatgagc |
130 |
Q |
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||||||| ||||| || ||||| ||||||||||||||| | || || ||||| |||| ||||||||||||||||||| | | ||| ||| | ||||||| |
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| T |
6717550 |
attttgatgagaaaggagaatttgggtcagtttgatggaagtcagattaggggattgtgtggtgctcctgaagagcctcagtgtatgggagttgatgagc |
6717451 |
T |
|
| Q |
131 |
ctttgaataagttgaagtttgaattgatgaagaagggtgcttctgtacttgttttgactggtttgggtggatctggtaaaagcactcttgctaag |
225 |
Q |
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||||||||||||||||| || |||| |||| | |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6717450 |
ctttgaataagttgaagattcaattattgaaagatggtgtttctgtacttgttttgactggtttaggtggatctggtaaaagcactcttgctaag |
6717356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 73 - 211
Target Start/End: Complemental strand, 6749719 - 6749581
Alignment:
| Q |
73 |
caaataaggggtttgtctggtgctcctgaagagcctgaatttattggaatggatgagcctttgaataagttgaagtttgaattgatgaagaagggtgctt |
172 |
Q |
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|||||||||||||||| |||||||||||||||||||| || || ||||||||||| |||||||||||||||||| |||| ||||||||| | |||| || |
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| T |
6749719 |
caaataaggggtttgtgtggtgctcctgaagagcctgtatgcatgggaatggatgaacctttgaataagttgaagattgagttgatgaaggatggtgttt |
6749620 |
T |
|
| Q |
173 |
ctgtacttgttttgactggtttgggtggatctggtaaaa |
211 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||| |
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| T |
6749619 |
ctgtactttttttgactggtttgggtggatctggtaaaa |
6749581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 73 - 225
Target Start/End: Complemental strand, 6740657 - 6740505
Alignment:
| Q |
73 |
caaataaggggtttgtctggtgctcctgaagagcctgaatttattggaatggatgagcctttgaataagttgaagtttgaattgatgaagaagggtgctt |
172 |
Q |
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||||| |||||| ||| |||||||||| | |||||||||||||||||||||| | ||| || ||| |||||||| |||||||||||||| | ||||||| |
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| T |
6740657 |
caaattaggggtctgtgtggtgctcctcaggagcctgaatttattggaatggttaagcaatttaatgagttgaaggttgaattgatgaaggatggtgctt |
6740558 |
T |
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| Q |
173 |
ctgtacttgttttgactggtttgggtggatctggtaaaagcactcttgctaag |
225 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6740557 |
ctgtgcttgttttgactggtttgggtggatctggtaaaaccactcttgctaag |
6740505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 35 - 161
Target Start/End: Complemental strand, 6762383 - 6762251
Alignment:
| Q |
35 |
tgaagagaatggtgaattcgggtcagtttgatgggaaacaaataaggggtttgtctggtgctcctgaagagcctgaatttattggaatggatga------ |
128 |
Q |
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|||| |||||||||| || ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
6762383 |
tgaatagaatggtgagtttgggtcagtttgatgggaaacagataaggggtttgtgtggtgctcctgaagagcctggatttattggaatggatgagccggc |
6762284 |
T |
|
| Q |
129 |
gcctttgaataagttgaagtttgaattgatgaa |
161 |
Q |
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|||||||||||| |||||| || |||||||||| |
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| T |
6762283 |
gcctttgaataatttgaaggttaaattgatgaa |
6762251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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