View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3369_low_1 (Length: 575)
Name: NF3369_low_1
Description: NF3369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3369_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 1 - 563
Target Start/End: Complemental strand, 52109208 - 52108649
Alignment:
| Q |
1 |
ttcttcattttcaccacactccatatttctgcactcagtgcttcacttccactgtcaaatcaatgttcacaagaagaaaattcctcaatatactttcatc |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52109208 |
ttcttcattttcatcacactccatatttctgcactcagtgcttcacttccactgtcaaatcaatgttcacaagaagaaaattcctcaatatactttcatc |
52109109 |
T |
|
| Q |
101 |
acgcaatgttaatgtttctaagctaatttctcaccaattaaatccaaatccacttccaaatccccaaacaatttcaaacaattttagggttttactattc |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
52109108 |
acgcaatgttaatgtttccaagctaatttctcaccaattaaatccaaatccacttccaaatccccaaa---tttcaaacaattttagggttttactattc |
52109012 |
T |
|
| Q |
201 |
aatctctatggaacccaagattccaaatttcccgaatacgagatgcctactgttacatggggtgtgattcaaggccgcaaagagaaactcgtttcgcggg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52109011 |
aatctctatggaacccaagattccaaatttccggaatacgagatgcctactgttacatggggtgtgattcaaggccgcaaagagaaactcgtttcgcggg |
52108912 |
T |
|
| Q |
301 |
tcatcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttccttcaaccgttgaagtcatgagggaacgtgttga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52108911 |
tcatcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttccttcaaccgttgaagtcatgagggaacgtgttga |
52108812 |
T |
|
| Q |
401 |
gtttattcagaaattagggttaacgattgatgatataaatcagtatcctttgattttgggttgtagtgttagaaaaaacatgattcctgttttagggtat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52108811 |
gtttattcagaaattagggttaacgattgatgatataaatcagtatcctttgattttgggttgtagtgttagaaaaaacatgattcctgttttagggtat |
52108712 |
T |
|
| Q |
501 |
ttagaaaaaattgggatttctaggtctaaacttggtgaatttattaagaattatccacaggtt |
563 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52108711 |
ttagaaaaaattgggatttctaggtctaaacttggtgaatttattaagaattatccacaggtt |
52108649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 170 - 563
Target Start/End: Complemental strand, 44520314 - 44519922
Alignment:
| Q |
170 |
aatttcaaacaattttagggttttactattcaatctctatggaacccaagattccaaatttcccgaatacgagatgcctactgttacatggggtgtgatt |
269 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44520314 |
aatttcaaacaattttagggttttattcttcaatctctatggaacccaagattccaaatttcctgaatacgagatgcctactgttacatggggtgtgatt |
44520215 |
T |
|
| Q |
270 |
caaggccgcaaagagaaactcgtttcgcgggtcatcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttcctt |
369 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44520214 |
caaggtcgcaaagagaaactcgtttcgagggtcatcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttcctt |
44520115 |
T |
|
| Q |
370 |
caaccgttgaagtcatgagggaacgtgttgagtttattcagaaattagggttaacgattgatgatataaatcagtatcctttgattttgggttgtagtgt |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44520114 |
caaccgttgaagtcatgagggaacgtgttgagtttattcagaaattagggttaacgattgatgatataaatcagtatcctttaattttgggttgtagtgt |
44520015 |
T |
|
| Q |
470 |
tagaaaaaacatgattcctgttttagggtatttagaaaaaattgggatttctaggtctaaacttggtgaatttattaagaattatccacaggtt |
563 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44520014 |
gagaaaaaacatgattcgtattttagggtatttataaaaaatt-ggatttctaggtctaaacttggtgaatttattaagaattatccacaggtt |
44519922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 44526294 - 44526207
Alignment:
| Q |
20 |
tccatatttctgcactcagtgcttcacttccactgtcaaatcaatgttcacaagaagaaaattcctcaatatactttcatcacgcaat |
107 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||| |||| | |||||||||||| |
|
|
| T |
44526294 |
tccataattctgcacccagtgcttcacttcctctatcaaatcaatgctcacaagaagaaaattcctcactatattctcatcacgcaat |
44526207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 44520388 - 44520337
Alignment:
| Q |
112 |
atgtttctaagctaatttctcaccaattaaatccaaatccacttccaaatcc |
163 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||| |||||||| |||| |
|
|
| T |
44520388 |
atgtttctaagctaatttcacaccaattatatccaaatgcacttccacatcc |
44520337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University