View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3369_low_3 (Length: 326)
Name: NF3369_low_3
Description: NF3369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3369_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 11 - 326
Target Start/End: Original strand, 43805995 - 43806310
Alignment:
| Q |
11 |
agcagagaggataagtttagaaaggcctttagacataccaccaaatacccacttgtgtgaagttgcgttcgagtgaaggaacaagggatggacatgaaga |
110 |
Q |
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| T |
43805995 |
agcagacaggataagtttagaaaggcctttagacataccaccaaatacccacttgtgtgaagttgcgttcgagtgaaggaacaagggatggacatgaaga |
43806094 |
T |
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| Q |
111 |
tagttttttgcatctgcagttcattttaaaaataaatacgcattatcaagccagaaagtcaaacaccatttgaactacatgccacaagctacaagccaca |
210 |
Q |
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| T |
43806095 |
tagttttttgcacctgcagttcattttaaaaataaatacgcattatcaagccagaaagtcaaacaccatttgaactacatgccacaagctacaagccaca |
43806194 |
T |
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| Q |
211 |
agcttaacacatagtatgtgagatctgaaaaataaattaatcgctatgacaatcaaatggaaaataagttgtaagtaatcatcattctatgaatataacc |
310 |
Q |
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| T |
43806195 |
agcttaacacatagtatgtgagatctgaaaaataaattaatcgctatgacaatcaaatggaaaataagttgtaagtaatcatcattctatgaatataacc |
43806294 |
T |
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| Q |
311 |
tagattaacagagcat |
326 |
Q |
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| T |
43806295 |
tagattaacagagcat |
43806310 |
T |
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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 128
Target Start/End: Original strand, 34845542 - 34845627
Alignment:
| Q |
43 |
acataccaccaaatacccacttgtgtgaagttgcgttcgagtgaaggaacaagggatggacatgaagatagttttttgcatctgca |
128 |
Q |
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| T |
34845542 |
acataccaccaaatgcccacttgtgggaagttgcatttgagtgaaggaacatggggtgtacatgtagatagtttttcccatctgca |
34845627 |
T |
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