View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3370_high_10 (Length: 239)
Name: NF3370_high_10
Description: NF3370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3370_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 39900867 - 39901047
Alignment:
| Q |
18 |
gatctatgtagtggactaattaaaaataatttgtgactgcttaattagatattctttcatctttcnnnnnnnnnnnn----tagatattctttcaaatca |
113 |
Q |
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| T |
39900867 |
gatctatgtagtggactaattaaaaataatttgtgactgcttaattagatattctttcatctttcaaaaaaaaaaaaaaaatagatattctttcaattga |
39900966 |
T |
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| Q |
114 |
gcatgttgaatgaatctcgaaagcttaggaagtgtctggccacctaacctactacaaagcaaaactgatataattaacttt |
194 |
Q |
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| T |
39900967 |
gcatgttgaatgaatctcgaaagcttaggaagtgtctggccacctaacctactacaaagcaaaactgatataattaacttt |
39901047 |
T |
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