View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3370_high_2 (Length: 506)
Name: NF3370_high_2
Description: NF3370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3370_high_2 |
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| [»] scaffold0667 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 13 - 487
Target Start/End: Original strand, 45242755 - 45243232
Alignment:
| Q |
13 |
aatatcacataagaatatagatataaacagca---gcagcaacccattttaaacaggaactgtacattaatctggaggaatttcactatacacaaatttc |
109 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45242755 |
aatatcacataagaatatagatataaacaacaacagcagcaacccattttaaacaggaactgtacattaatctggaggaatttcactatacacaaatttc |
45242854 |
T |
|
| Q |
110 |
taaacaacatttttcttatacacggataccacagcagggtggaatagtctcaactcagagataagctcgtcaaaatgatgatttaggagtgaggatatat |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45242855 |
taaacaacatttttcttatacacggataccacagcagggtggaatagtctcaactcagaaataagctcgtcaaaatgatgatttaggagtgaggatatat |
45242954 |
T |
|
| Q |
210 |
aaaataacgaagaggnnnnnnnntcaattcatatcgagattctttctttaactaaatttatatgaaaatgaattgttgtctagcttaatgcttttcttcg |
309 |
Q |
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||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45242955 |
aaaataacgaagaggaaaaaaaatcaattcatatcgaggttctttctttaactaaatttatatgaaaatgaattgttgtctagcttaatgcttttcttcg |
45243054 |
T |
|
| Q |
310 |
tcacacacaaaacatacactctttattgtttctttcgaaattcaacatgcagtcattttcaaaatcatgtaaaaatatgtacataaacaaacgatacaaa |
409 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45243055 |
tcacacacacaacatacactctttattgtttctttcgaaattcaacatgcagtcattttcaaaatcatgtaaaaatatgtacataaacaaacgacacaaa |
45243154 |
T |
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| Q |
410 |
aagttgattcgatttgacctctaataaaatgcagttatgttatttcgacatcaaaatacatacaccataatatatgat |
487 |
Q |
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| T |
45243155 |
aagttgattcgatttgacctctaataaaatgcagttatgttatttcgacatcaaaatacatacaccataaaatatgat |
45243232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 390 - 478
Target Start/End: Complemental strand, 8576934 - 8576845
Alignment:
| Q |
390 |
acataaacaaacgatacaa-aaagttgattcgatttgacctctaataaaatgcagttatgttatttcgacatcaaaatacatacaccata |
478 |
Q |
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| T |
8576934 |
acataaacaaactacacaagaaaggtgattcaatttgacctctaacaaaatgcagttgtgttatttcaacatcaaaatacatacaccata |
8576845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 8580242 - 8580177
Alignment:
| Q |
233 |
tcaattcatatcgagattctttctttaactaaatttatatgaaaatgaattgttgtctagcttaat |
298 |
Q |
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| T |
8580242 |
tcaattcatattgatattctttctttaacctaatttataagaaaatggatcattgtctaacttaat |
8580177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 9061925 - 9061857
Alignment:
| Q |
135 |
ataccacagcagggtggaatagtctcaac--tcagagataagctcgtcaaaatgatgatttaggagtga |
201 |
Q |
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| T |
9061925 |
ataccacagcagggtggaatagtctccacattcagaaataagttggccaaaataattatttaggagtga |
9061857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 163
Target Start/End: Original strand, 9315508 - 9315536
Alignment:
| Q |
135 |
ataccacagcagggtggaatagtctcaac |
163 |
Q |
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| T |
9315508 |
ataccacagcagggtggaatagtctcaac |
9315536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 12019637 - 12019601
Alignment:
| Q |
127 |
atacacggataccacagcagggtggaatagtctcaac |
163 |
Q |
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| T |
12019637 |
atacacagataccacaacagggtggaatagtctcaac |
12019601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 2000 - 2058
Alignment:
| Q |
143 |
gcagggtggaatagtctcaac--tcagagataagctcgtcaaaatgatgatttaggagt |
199 |
Q |
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| T |
2000 |
gcagggtggaatagtctcaacattcagaaataagctggtcaaaataattatttaggagt |
2058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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