View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3370_high_6 (Length: 303)
Name: NF3370_high_6
Description: NF3370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3370_high_6 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 146 - 303
Target Start/End: Original strand, 10464163 - 10464321
Alignment:
| Q |
146 |
atttacactcattttactaatttacactcactttattaatgaacacacatttatgtttcaaatatacaaatagaaatatgaaacaaacattcttatgcat |
245 |
Q |
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| T |
10464163 |
atttacactcattttactaatttacactcactttattaatgaacatgcatttatgtttcaaatatacaaatagaaatatgaaacaaacattcttatgcat |
10464262 |
T |
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| Q |
246 |
gcaagctcctaaaataccatgaaacattagtttttcgttggaag-aaatctccaaaaca |
303 |
Q |
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| T |
10464263 |
gcaagctcctaaaataccatgaaacattagtttctcgttggaagaaaatctccaaaaca |
10464321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 10463489 - 10463620
Alignment:
| Q |
13 |
aatattaatgtgtaaattaacaaatgagcatcttttcatttaatttgaacaaaaatatcattcatctttgtgacttaaaactagtaaattgaaggttagt |
112 |
Q |
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| T |
10463489 |
aatattaatgtgtaaattaacaaatgagcatcttt-catttaatttgaaccaaaatatcattcatctttgtgacttaaaactagtaaattgaaggttagt |
10463587 |
T |
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| Q |
113 |
tttgtaactttcattaaataatgtttcttaatt |
145 |
Q |
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| T |
10463588 |
tttgtaactttcattaaataatgttttttaatt |
10463620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 130
Target Start/End: Complemental strand, 14188557 - 14188482
Alignment:
| Q |
55 |
atttgaacaaaaatatcattcatctttgtgacttaaaactagtaaattgaaggttagttttgtaactttcattaaa |
130 |
Q |
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| T |
14188557 |
atttggacaaaaatatcattcatctttattatttaaaactaatagcttgaaggttattttcgtaattttcattaaa |
14188482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 28598692 - 28598779
Alignment:
| Q |
142 |
aattatttacactcattttactaatttacactcactttattaatgaacacacatttatgtttcaaatatacaaatagaaatatgaaacaa |
231 |
Q |
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| T |
28598692 |
aattatttacacccaccttgctaatttacactcactttgttgatga--acacctttatgtttcaaatagacaattataaacattaaacaa |
28598779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 39586579 - 39586506
Alignment:
| Q |
55 |
atttgaacaaaaatatcattcatctttgtgacttaaaactagtaaattgaaggttagttttgtaactttcatta |
128 |
Q |
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| T |
39586579 |
atttggacaaaaatatcattcatctttattatttaaaactaataacttgagggttactttagtaatttttatta |
39586506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 45414632 - 45414577
Alignment:
| Q |
89 |
aaaactagtaaattgaaggttagttttgtaactttcattaaataatgtttcttaatt |
145 |
Q |
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| T |
45414632 |
aaaactagttacttgaaggttagttttataattttcattaaa-aatgtttgttaatt |
45414577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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