View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3370_high_7 (Length: 284)
Name: NF3370_high_7
Description: NF3370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3370_high_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 284
Target Start/End: Complemental strand, 10464631 - 10464352
Alignment:
| Q |
5 |
cattatagactatgctaagaacgtgcgtgatgccttttgcatgccgaaatatgagatttgtaatggggtttgaatatgatttggagggagcatttcactc |
104 |
Q |
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| T |
10464631 |
cattatagactatgctaagaacgtgcgtgataccttt-gcatgccaaaatatgaggtttgtaatggggtttgaatatgatttggagggagcatttcactc |
10464533 |
T |
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| Q |
105 |
atattatagtggagagc-gactcgaataatctcagtgatatgattattgaaaatttcaaatttatgggaatatctctatcttactgctctgaatcctaca |
203 |
Q |
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||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| |||| ||||| |||||||||| |
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| T |
10464532 |
atattatagtggagagccgactcgaataatctcaatgatatgattattgaaaatttcaagtttatgggaatatcactaccttagtgctccgaatcctaca |
10464433 |
T |
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| Q |
204 |
actattgaagaacagttggcacgtgtaaattagccatacttggagtgaggaaaatagaagtgttgcatgacttgtaaattt |
284 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
10464432 |
actattgacgaacagttggcacgtgtaaattagccatacttaacatgaggaaaatagaagtgttgtatgacttgtaaattt |
10464352 |
T |
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