View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3370_high_8 (Length: 261)
Name: NF3370_high_8
Description: NF3370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3370_high_8 |
 | |
|
| [»] scaffold0710 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0710 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 4568 - 4758
Alignment:
| Q |
1 |
tttggaaagttggcaaagatgatccaagaaaagtggttcattcattgaaagttggtttagctttgacacttgtttcattgttgtatctaatggaaccatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4568 |
tttggaaagttggcaaagatgatccaagaaaagtggttcattcattgaaagttggtttagctttgacacttgtttcattgttgtatctaatggaaccatt |
4667 |
T |
|
| Q |
101 |
gtacaaagggataggaaaaaatgctgttgttgctgtcatgactgtggttgtggtcatggagtttacagtaggtaggaaattttcatttctc |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4668 |
gtacaaagggataggaaaaaatgctgttgttgctgtcatgactgtggttgtggtcatggagtttacagtaggtaggaaattttcatttctc |
4758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 51860609 - 51860799
Alignment:
| Q |
1 |
tttggaaagttggcaaagatgatccaagaaaagtggttcattcattgaaagttggtttagctttgacacttgtttcattgttgtatctaatggaaccatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51860609 |
tttggaaagttggcaaagatgatccaagaaaagtggttcattcattgaaagttggtttagctttgacacttgtttcattgttgtatctaatggaaccatt |
51860708 |
T |
|
| Q |
101 |
gtacaaagggataggaaaaaatgctgttgttgctgtcatgactgtggttgtggtcatggagtttacagtaggtaggaaattttcatttctc |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51860709 |
gtacaaagggataggaaaaaatgctgttgttgctgtcatgactgtggttgtggtcatggagtttacagtaggtaggaaattttcatttctc |
51860799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 51850162 - 51850324
Alignment:
| Q |
1 |
tttggaaagttggcaaagatgatccaagaaaagtggttcattcattgaaagttggtttagctttgacacttgtttcattgttgtatctaatggaaccatt |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||| ||||| |||||||||||| | |||||||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
51850162 |
tttggaatgttggcaaagatgatccaagaagggtggtccattctttgaaagttggtcttgctttgacacttgtatctttgttgtatctaatggagccatt |
51850261 |
T |
|
| Q |
101 |
gtacaaagggataggaaaaaatgctgttgttgctgtcatgactgtggttgtggtcatggagtt |
163 |
Q |
| |
|
|| |||||||||||| |||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
51850262 |
gttcaaagggataggggaaaatgctatgtgggctgtcatgactgtggttgtggtcatggagtt |
51850324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 53 - 174
Target Start/End: Complemental strand, 51756057 - 51755936
Alignment:
| Q |
53 |
tggtttagctttgacacttgtttcattgttgtatctaatggaaccattgtacaaagggataggaaaaaatgctgttgttgctgtcatgactgtggttgtg |
152 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||| ||||| ||||||| ||||| ||| ||||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
51756057 |
tggtttagttttgacacttgtttccttgttgtatcttatggagccattgttcaaagtgatgggaaagaatgttgtggttgctgtcatgactgtggttgtt |
51755958 |
T |
|
| Q |
153 |
gtcatggagtttacagtaggta |
174 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
51755957 |
gtcatggagtttactgtaggta |
51755936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 51820612 - 51820786
Alignment:
| Q |
1 |
tttggaaagttggcaaagatgatccaagaaaagtggttcattcattgaaagttggtttagctttgacacttgtttcattgttgtatctaatggaaccatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | ||||| ||||||||||| | ||||| |||| || || ||| |||||||||||||||| || |
|
|
| T |
51820612 |
tttggaaagttggcaaagatgatccaagaaggatactccattctctgaaagttggtcttgctttagcactagtatctttgctgtatctaatggaaccttt |
51820711 |
T |
|
| Q |
101 |
gtacaaagggataggaaaaaatgctgttgttgctgtcatgactgtggttgtggtcatggagtttacagtaggtag |
175 |
Q |
| |
|
|| ||||||||||||| ||||||| | |||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
51820712 |
gttcaaagggataggatcaaatgctatgtgggctgtcatgactgtggttgtggtcatggagttcactgtaggtag |
51820786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University