View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3370_low_12 (Length: 225)

Name: NF3370_low_12
Description: NF3370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3370_low_12
NF3370_low_12
[»] chr7 (17 HSPs)
chr7 (18-211)||(26204161-26204354)
chr7 (18-211)||(26223799-26223992)
chr7 (18-111)||(26191532-26191625)
chr7 (18-116)||(26088049-26088147)
chr7 (18-116)||(26111837-26111935)
chr7 (18-132)||(26155470-26155584)
chr7 (18-111)||(19103334-19103427)
chr7 (18-123)||(26179350-26179455)
chr7 (18-111)||(26242664-26242757)
chr7 (18-132)||(26297712-26297826)
chr7 (18-108)||(26302069-26302159)
chr7 (22-132)||(26128838-26128948)
chr7 (18-109)||(26186509-26186600)
chr7 (18-108)||(26251112-26251202)
chr7 (144-210)||(26302211-26302277)
chr7 (22-120)||(26227267-26227365)
chr7 (169-210)||(26297875-26297916)
[»] chr4 (1 HSPs)
chr4 (17-109)||(44903516-44903608)


Alignment Details
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 26204161 - 26204354
Alignment:
Q  18 tatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtataggaccagtttcagcatggat 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26204161 tatacaatagttttcatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtataggaccggtttcagcatggat 26204260  T
Q  118 taacaaagacgatgataaaggatacacggaaaagaacattggaaaagatcaagaattggtaaattggcttaattctaaggaaaatgagtctgtg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26204261 taacaaagacgatgataaaggatacacggaaaagaacattggaaaagatcaagaattggtaaattggcttaattctaaggaaaacgagtctgtg 26204354  T

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Target: chr7; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 26223799 - 26223992
Alignment:
Q  18 tatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtataggaccagtttcagcatggat 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26223799 tatacaatagttttcatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtataggaccggtttcagcatggat 26223898  T
Q  118 taacaaagacgatgataaaggatacacggaaaagaacattggaaaagatcaagaattggtaaattggcttaattctaaggaaaatgagtctgtg 211  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26223899 taacaaagacgatgataaaggatacacagaaaagaacattggaaaagatcaagaattggtaaattggcttaattctaaggaaaacgagtctgtg 26223992  T

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Target: chr7; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 26191532 - 26191625
Alignment:
Q  18 tatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtataggaccagtttcagc 111  Q
    |||||||||||||| |||||||||||||||| |||||||||||| |||| |||||||  |||||||||||||||||| ||||||||||||||||    
T  26191532 tatacaatagttttcatgaactagaaagtgaatatgagaaactttgtaatactacaagggggatcaaatcttggagtgtaggaccagtttcagc 26191625  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 26088049 - 26088147
Alignment:
Q  18 tatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtataggaccagtttcagcatgga 116  Q
    |||||||||||||| ||||||| |||||||||||||| |||||||| |  |||||||| |||||||||||||||||| |||| ||||||||||| ||||    
T  26088049 tatacaatagttttcatgaactggaaagtgattatgaaaaacttggaagcactacaatggggatcaaatcttggagtgtagggccagtttcagcttgga 26088147  T

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Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 26111837 - 26111935
Alignment:
Q  18 tatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtataggaccagtttcagcatgga 116  Q
    |||||||||||||| ||||||| |||||||||||||| |||||||| |  |||||||| |||||||||||||||||| |||| ||||||||||| ||||    
T  26111837 tatacaatagttttcatgaactggaaagtgattatgaaaaacttggaagcactacaatggggatcaaatcttggagtgtagggccagtttcagcttgga 26111935  T

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Target: chr7; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 26155470 - 26155584
Alignment:
Q  18 tatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtataggaccagtttcagcatggat 117  Q
    |||||||||||||| ||||||| |||||||||||||| |||||| |||| ||||| || ||||||||| |||||||| |||||||||||||| |||||      
T  26155470 tatacaatagttttcatgaactggaaagtgattatgaaaaacttagtaacactaccatggggatcaaaacttggagtgtaggaccagtttcatcatgggc 26155569  T
Q  118 taacaaagacgatga 132  Q
    |||||| || |||||    
T  26155570 taacaaggatgatga 26155584  T

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Target: chr7; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 19103427 - 19103334
Alignment:
Q  18 tatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtataggaccagtttcagc 111  Q
    |||||||||||||| ||||||| |||||||||||||  ||||||||||| |||||| | ||||||||||||||| || ||||||||||||||||    
T  19103427 tatacaatagttttcatgaactggaaagtgattatgtaaaacttggtaagactacattggggatcaaatcttggtgtgtaggaccagtttcagc 19103334  T

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Target: chr7; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 26179350 - 26179455
Alignment:
Q  18 tatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtataggaccagtttcagcatggat 117  Q
    |||||||||||||| ||||||| |||||||||||||| ||| |  |||| |||||||| ||||||||| |||||||| |||||||||||||||| ||||     
T  26179350 tatacaatagttttcatgaacttgaaagtgattatgaaaaattaagtaacactacaatggggatcaaaacttggagtgtaggaccagtttcagcttggac 26179449  T
Q  118 taacaa 123  Q
    ||||||    
T  26179450 taacaa 26179455  T

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Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 26242664 - 26242757
Alignment:
Q  18 tatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtataggaccagtttcagc 111  Q
    ||||||| |||||| ||||||| ||||||||||||||||| ||| ||||||||||||| || |||||||| |||||| | ||||||||||||||    
T  26242664 tatacaacagttttcatgaacttgaaagtgattatgagaatcttagtaaaactacaatcggaatcaaatcatggagtgtcggaccagtttcagc 26242757  T

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Target: chr7; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 26297712 - 26297826
Alignment:
Q  18 tatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtataggaccagtttcagcatggat 117  Q
    ||||||| |||||| ||||||| |||||||||||||||||||||  |||||||||||| || ||||| || |||||| | |||||||||||||| |||      
T  26297712 tatacaacagttttcatgaacttgaaagtgattatgagaaactttttaaaactacaatcggaatcaagtcatggagtgtcggaccagtttcagcctgggc 26297811  T
Q  118 taacaaagacgatga 132  Q
    |||||| || |||||    
T  26297812 taacaaggatgatga 26297826  T

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Target: chr7; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 26302069 - 26302159
Alignment:
Q  18 tatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtataggaccagtttc 108  Q
    |||||||||||||| ||||||| ||||||||||||| ||||||| || |||| ||||| || ||||||||||||| | |||||||||||||    
T  26302069 tatacaatagttttcatgaacttgaaagtgattatgtgaaacttagtcaaacaacaatgggaatcaaatcttggaatgtaggaccagtttc 26302159  T

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Target: chr7; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 132
Target Start/End: Original strand, 26128838 - 26128948
Alignment:
Q  22 caatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtataggaccagtttcagcatggattaac 121  Q
    |||||||||| ||||||| |||||||||||||| ||  || |||| |||||  | |||||||||||||||||| |||||||||||||| |||||  ||||    
T  26128838 caatagttttcatgaactggaaagtgattatgaaaacatttgtaacactaccttggggatcaaatcttggagtgtaggaccagtttcatcatgggctaac 26128937  T
Q  122 aaagacgatga 132  Q
    || || |||||    
T  26128938 aaggatgatga 26128948  T

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Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 26186509 - 26186600
Alignment:
Q  18 tatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtataggaccagtttca 109  Q
    |||||||||||||| ||||||| || ||||||||| | |||||| |||| ||||   | ||||||||||| |||||| ||||||||||||||    
T  26186509 tatacaatagttttcatgaactggagagtgattataaaaaacttagtaacactatcttggggatcaaatcatggagtgtaggaccagtttca 26186600  T

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Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 26251112 - 26251202
Alignment:
Q  18 tatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtataggaccagtttc 108  Q
    ||||||| |||||| ||||||| |||| |||||| ||||| ||| |||||| |||||| || |||||||| |||||| | |||||||||||    
T  26251112 tatacaacagttttcatgaacttgaaaatgattacgagaagctttgtaaaagtacaattggaatcaaatcatggagtgtcggaccagtttc 26251202  T

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Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 26302211 - 26302277
Alignment:
Q  144 cggaaaagaacattggaaaagatcaagaattggtaaattggcttaattctaaggaaaatgagtctgt 210  Q
    |||| |||||| ||||||||||   ||||||||||||||||||||| || ||| |||||||||||||    
T  26302211 cggagaagaactttggaaaagaaacagaattggtaaattggcttaactcaaagcaaaatgagtctgt 26302277  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 26227267 - 26227365
Alignment:
Q  22 caatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtataggaccagtttcagcatggattaa 120  Q
    |||||| ||| | ||||| ||| ||||||||||||| |||   || |  ||||| ||||||||| | |||||| |||||||||||||||||||| ||||    
T  26227267 caatagctttcacgaacttgaaggtgattatgagaatctttacaagagcacaatggggatcaaagcatggagtgtaggaccagtttcagcatggcttaa 26227365  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 26297875 - 26297916
Alignment:
Q  169 agaattggtaaattggcttaattctaaggaaaatgagtctgt 210  Q
    ||||||| |||||||||||||||| ||||||||||| |||||    
T  26297875 agaattgctaaattggcttaattcgaaggaaaatgaatctgt 26297916  T

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Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 44903516 - 44903608
Alignment:
Q  17 atatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtataggaccagtttca 109  Q
    |||| |||||||||| ||||||| |||||||||||||||||| || ||||||||||||| ||||| || ||||||||| ||||||||||||||    
T  44903516 atatgcaatagttttcatgaacttgaaagtgattatgagaaagttagtaaaactacaatggggattaagtcttggagtgtaggaccagtttca 44903608  T

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