View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3370_low_4 (Length: 343)
Name: NF3370_low_4
Description: NF3370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3370_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 333
Target Start/End: Original strand, 55174566 - 55174879
Alignment:
| Q |
20 |
cccagaagctggttcacaacgttgaatgaggacaatcttatatgggtgtgaaaggaaccccaaacatagatagaatagaggcttggagaaaacctcggat |
119 |
Q |
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| T |
55174566 |
cccagaagctggttcacaacgttgaatgaggacaatcttatatgggtgtgaaaggaaccccaaacatagatagaatagaggcttggagaaaacctcggat |
55174665 |
T |
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| Q |
120 |
ttccattgaaaactattggtggagagtgttttgtttttctttctatcatttgaattatcccattaactatttttggctttaacattaacatcaaattaaa |
219 |
Q |
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| T |
55174666 |
ttccattgaaaactattggtggagagtgttttgtttttctttctatcatttgaattatcccattaactatttttggctttaacattaacatcaaattaaa |
55174765 |
T |
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| Q |
220 |
catgcatcgtaacatccaactatatgctacaattatttaatccaattgcattttctagtagttacctagtgagatttcggcaatacaatactcttacctt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55174766 |
catgcatcgtaacatccaactatatgctacaattatttaatccaattgcattttctagtagttacctagtgagatttcggcaatacaatactcttacctt |
55174865 |
T |
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| Q |
320 |
gactacaacttcat |
333 |
Q |
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|||||||||||||| |
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| T |
55174866 |
gactacaacttcat |
55174879 |
T |
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