View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3370_low_6 (Length: 324)
Name: NF3370_low_6
Description: NF3370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3370_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 2 - 171
Target Start/End: Complemental strand, 7639474 - 7639305
Alignment:
| Q |
2 |
tgaatagtatcctctgaaaacttaagacactagtacaacaaacataaatagtttgattattgtgatataaagaagtatccaatgaaaaaacagacagatt |
101 |
Q |
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| T |
7639474 |
tgaatagtatcctctgaaaacttaagacactagtacaacaaacataaatagtttgattattgtgatataaagaagtatccaatgaaaaaacatacagatt |
7639375 |
T |
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| Q |
102 |
attaaggcaacattgtcaattgaaatcatcttatacaaaaacaattttgaccaaatctcaagagaatatt |
171 |
Q |
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| T |
7639374 |
attaaggcaacattgtcaattgaaatcatcctatacaaaaacaattttgaccaaatctcaagagaatatt |
7639305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 7639248 - 7639168
Alignment:
| Q |
228 |
ctgataatttgagagattttacactactaagtccactcaatagctcaattgcacgttgacctgaaacttgtgtttcttttg |
308 |
Q |
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| T |
7639248 |
ctgataatttgagagattttacactactaagtccactcaatagctcaattgcacgttgacctgaaacttgtgtttcttttg |
7639168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 280
Target Start/End: Original strand, 14728628 - 14728671
Alignment:
| Q |
237 |
tgagagattttacactactaagtccactcaatagctcaattgca |
280 |
Q |
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| T |
14728628 |
tgagagatttgacactaccaagtcgactcaatagctcaattgca |
14728671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 281
Target Start/End: Complemental strand, 7632544 - 7632491
Alignment:
| Q |
228 |
ctgataatttgagagattttacactactaagtccactcaatagctcaattgcac |
281 |
Q |
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| T |
7632544 |
ctgataagctgagagactttacgctacttaatccactcaatagctcaattgcac |
7632491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 280
Target Start/End: Complemental strand, 17594859 - 17594816
Alignment:
| Q |
237 |
tgagagattttacactactaagtccactcaatagctcaattgca |
280 |
Q |
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| T |
17594859 |
tgagagatttgacactaccaagtcgactcaatagctcaattgca |
17594816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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