View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3371_high_10 (Length: 379)

Name: NF3371_high_10
Description: NF3371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3371_high_10
NF3371_high_10
[»] chr6 (5 HSPs)
chr6 (175-341)||(34957169-34957335)
chr6 (19-183)||(34957477-34957640)
chr6 (189-362)||(7672944-7673129)
chr6 (178-362)||(7656425-7656621)
chr6 (276-357)||(1569698-1569778)
[»] chr2 (2 HSPs)
chr2 (210-357)||(18457672-18457825)
chr2 (294-358)||(43881948-43882012)
[»] chr5 (1 HSPs)
chr5 (272-358)||(11240882-11240969)
[»] chr8 (2 HSPs)
chr8 (272-357)||(129991-130077)
chr8 (273-358)||(45482933-45483019)
[»] chr1 (1 HSPs)
chr1 (273-358)||(48735013-48735099)
[»] chr7 (2 HSPs)
chr7 (276-357)||(15746533-15746613)
chr7 (117-153)||(44213158-44213194)
[»] scaffold0604 (1 HSPs)
scaffold0604 (304-358)||(7346-7400)


Alignment Details
Target: chr6 (Bit Score: 135; Significance: 3e-70; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 175 - 341
Target Start/End: Complemental strand, 34957335 - 34957169
Alignment:
Q  175 tttaatgaagagtgttgtattttcatggtgcttcttgagattcaagtgaaggacgagggaaaaggagattgaagtgaggttaaggatgtgtagtgttagt 274  Q
    ||||||| |||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34957335 tttaatggagagtgttgtattttcatggtgctccgtgagattcaagtgaaggaagagggaaaaggagattgaagtgaggttaaggatgtgtagtgttagt 34957236  T
Q  275 gtgaattgctactctgcattttcagatttgggggtgtattcagcaaaaataataaaaccaatacttt 341  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  34957235 gtgaattgctactctgctttttcagatttgaaggtgtattcagcaaaaacaataaaaccaatacttt 34957169  T

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Target: chr6; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 34957640 - 34957477
Alignment:
Q  19 agtatactgagttgtatcataatgtattaaaaaacagcaaacacgaaagagagtcctcgtattcagcaagcatataccattataaatcctttaatatgat 118  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  34957640 agtatactgagttgtatcataatgtattaaaag-cagcaaacacgaaagagagtcctagtattcagcaagcatatacaattataaatcctttaatatgat 34957542  T
Q  119 aaagaaagtcttatacatatctttaattttaaagacggcataaattaacaatgagatttaatgaa 183  Q
    |||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||    
T  34957541 aaagaaagtcttatacatatctttaagtttaaagactgcataaatcaacaatgagatttaatgaa 34957477  T

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Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 189 - 362
Target Start/End: Original strand, 7672944 - 7673129
Alignment:
Q  189 ttgtattttcatggtgcttct---tgagattcaagtgaaggacgagggaaaaggagattgaagtgaggttaaggatgtgtagtg--------ttagtgtg 277  Q
    |||||||||||||||||| ||   |||||||||||||||||| |||||||||||| | ||||||||| || | |||| |  |||        ||||||||    
T  7672944 ttgtattttcatggtgctcctatgtgagattcaagtgaaggaagagggaaaaggaaactgaagtgagattcatgatgaggggtgacatgttgttagtgtg 7673043  T
Q  278 aattgctactctgcattttcagatttggggg-tgtattcagcaaaaataataaaaccaatactttctattaaaatatgtttcattt 362  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  7673044 aattgcttctctgcattttcagatttgggggatgtattcagcaaaaacaataaaaccaatattttctattaaaatatgtttcattt 7673129  T

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Target: chr6; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 178 - 362
Target Start/End: Complemental strand, 7656621 - 7656425
Alignment:
Q  178 aatgaagagtgttgtattttcatggtgcttct---tgagattcaagtgaaggacgagggaaaaggagattgaagtgaggttaaggatgtgtagtg----- 269  Q
    |||| ||||| ||| |||| ||||||||||||   |||||||||||||||||| |||||||||||||| ||||||||| || | |||| |  |||         
T  7656621 aatggagagtcttgcatttccatggtgcttctatgtgagattcaagtgaaggaagagggaaaaggagaatgaagtgagattcatgatgaggggtgacgtg 7656522  T
Q  270 ---ttagtgtgaattgctactctgcattttcagatttg-ggggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgtttcattt 362  Q
       |||||||||||||||||| |||||||||||||||| |||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||    
T  7656521 ttgttagtgtgaattgctactttgcattttcagatttgaggggtgtattaagcaaaaacaataaaaccaatattttctattaaaatatgtttcattt 7656425  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 276 - 357
Target Start/End: Complemental strand, 1569778 - 1569698
Alignment:
Q  276 tgaattgctactctgcattttcagatttgggggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgttt 357  Q
    |||||||||  ||||||||||||| ||||||||||| | ||||||||| ||||||||||||| ||||||||| |||||||||    
T  1569778 tgaattgctgttctgcattttcag-tttgggggtgtttccagcaaaaacaataaaaccaatattttctattataatatgttt 1569698  T

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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 210 - 357
Target Start/End: Original strand, 18457672 - 18457825
Alignment:
Q  210 tgagattcaagtgaaggacgagggaaaaggagattgaagtgaggttaaggatgtgtag-----tgttagtgtgaattgctactctgcattttcagatttg 304  Q
    |||||||||||||||||| |||| ||||||||||||||||||| || | |||||| ||     ||||||||||||||||| |||||||||||| ||||||    
T  18457672 tgagattcaagtgaaggaagaggaaaaaggagattgaagtgagattcaagatgtgcagcgacgtgttagtgtgaattgcttctctgcattttcggatttg 18457771  T
Q  305 -ggggtgtattcagcaaaaataataaaaccaatactttct-attaaaatatgttt 357  Q
     ||||||||| ||||||||| ||||||||||||| ||||| |||| |||||||||    
T  18457772 aggggtgtatacagcaaaaacaataaaaccaata-tttctcattataatatgttt 18457825  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 358
Target Start/End: Original strand, 43881948 - 43882012
Alignment:
Q  294 tttcagatttgggggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgtttc 358  Q
    |||||| ||||||||||||| ||| ||||  |||| |||||||| |||| |||| ||||||||||    
T  43881948 tttcagttttgggggtgtatccagtaaaagcaatataaccaatattttccattataatatgtttc 43882012  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 272 - 358
Target Start/End: Original strand, 11240882 - 11240969
Alignment:
Q  272 agtgtgaattgctactctgcattttcagattt-gggggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgtttc 358  Q
    |||||||||||||||||||||||| || |||| |||||||| ||||||||||| ||||||||||||| |||| |||| ||||||||||    
T  11240882 agtgtgaattgctactctgcatttccaaatttcgggggtgtcttcagcaaaaacaataaaaccaatattttccattataatatgtttc 11240969  T

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Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 129991 - 130077
Alignment:
Q  272 agtgtgaattgctactctgcattttcaga-tttgggggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgttt 357  Q
    ||||||||||||||||||||||||||||| |||||||||||   ||||||||| ||||||| ||||| |||| |||| |||||||||    
T  129991 agtgtgaattgctactctgcattttcagattttgggggtgtcaccagcaaaaacaataaaatcaatattttcaattataatatgttt 130077  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 358
Target Start/End: Original strand, 45482933 - 45483019
Alignment:
Q  273 gtgtgaattgctactctgcat-tttcagatttgggggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgtttc 358  Q
    ||||||||| |||||||  || ||| || ||||||||||||| ||| ||||| ||||||||||||| |||  |||| ||||||||||    
T  45482933 gtgtgaattactactctcaatgtttaagttttgggggtgtatccagaaaaaacaataaaaccaatatttttcattataatatgtttc 45483019  T

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Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 273 - 358
Target Start/End: Complemental strand, 48735099 - 48735013
Alignment:
Q  273 gtgtgaattgctactctgcattttcagatttgg-gggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgtttc 358  Q
    ||||||||||||||||||||||||||| ||||| ||||||   ||||||||| ||||||||||||| |||| |||| ||||||||||    
T  48735099 gtgtgaattgctactctgcattttcagttttggagggtgtcaccagcaaaaacaataaaaccaatattttccattataatatgtttc 48735013  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 276 - 357
Target Start/End: Original strand, 15746533 - 15746613
Alignment:
Q  276 tgaattgctactctgcattttcagatttgggggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgttt 357  Q
    |||||||||  ||||||||||||| ||||||||||| | ||||||||| ||||||||||||| ||||||||| |||||||||    
T  15746533 tgaattgctgttctgcattttcag-tttgggggtgtttccagcaaaaacaataaaaccaatattttctattataatatgttt 15746613  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 44213194 - 44213158
Alignment:
Q  117 ataaagaaagtcttatacatatctttaattttaaaga 153  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  44213194 ataaagaaagtcttatacatacctttaagtttaaaga 44213158  T

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Target: scaffold0604 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 358
Target Start/End: Complemental strand, 7400 - 7346
Alignment:
Q  304 gggggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgtttc 358  Q
    |||||||||| ||||||||| ||||||||||||| |||| |||| ||||||||||    
T  7400 gggggtgtatccagcaaaaacaataaaaccaatattttccattataatatgtttc 7346  T

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