View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3371_high_13 (Length: 340)
Name: NF3371_high_13
Description: NF3371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3371_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 35047503 - 35047176
Alignment:
| Q |
1 |
cttatacttttttaatttatgattagggcatctccattgtattccacaatgttctacaagttcaagaacatgatctagtttcattgtccattgaagttgg |
100 |
Q |
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| T |
35047503 |
cttatacttttttaatttatgattagggcatctccattgtattccacaatgttctacaagttcaagaacatgatctagtttcattgtccattgaagttgg |
35047404 |
T |
|
| Q |
101 |
gtgatgtgaaagtcaggtcggagaactgttcctcaaggaaaacatgttccagcagctatacgtcacaaaaaagtaggaagaaagggaaagaaaatccaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35047403 |
atgatgtgaaagtcaggtcggagaactgttcctcaaggaaaacatgttccagcagctatacgtcccaaaaaagtaggaagaaagggaaagaaaatccaga |
35047304 |
T |
|
| Q |
201 |
tttgaaaatacgttaacgacaaagcttgagttttttgaaaatccagatttatcatctattagagtnnnnnnnnnnnnnnngaaaggatctattagagtaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
35047303 |
tttgaaaatacgttaacgacaaagcttgagttttttgaaaatccagatttatcatctattagaataaattttttttttttgaaaggatctattagagtaa |
35047204 |
T |
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| Q |
301 |
aaatagatgataaatctcacatgatatt |
328 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
35047203 |
aaatagatgataaatctcacatgatatt |
35047176 |
T |
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