View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3371_high_20 (Length: 258)
Name: NF3371_high_20
Description: NF3371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3371_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 9214149 - 9213910
Alignment:
| Q |
1 |
ctaatctattcatatagtgtttgatgttaatgtaaattattttctcatgtattcagggatgacaaagaacagcaattttgttaaagaggtctcctcacat |
100 |
Q |
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| T |
9214149 |
ctaatctattcatatagtgtttgatgttaatgtaaattattttctcatgtattcagggatgacaaagaacagcaattttgttaaagaggtctcctcacat |
9214050 |
T |
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| Q |
101 |
tttagaaaagaagatgaagttattgttgtaagtgcatgagattatgcatgttattttcaagtactccaacttaattcatctgccaatgtaaattaatgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9214049 |
tttagaaaagaagatgaagttattgttgtaagtgcatgagattatgtatgttattttcaagtactccaacttaattcatctgctaatgtaaattaatgtt |
9213950 |
T |
|
| Q |
201 |
gttgtttttgcagggttgtcagcttgggaaaaggtctatg |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
9213949 |
attgtttttgcagggttgtcagcttgggaaaaggtctatg |
9213910 |
T |
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