View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3371_high_21 (Length: 255)
Name: NF3371_high_21
Description: NF3371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3371_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 44085516 - 44085276
Alignment:
| Q |
1 |
tgaaatatacataaaatgagctggaaacagtgattaagctagatttgccattaggcaccagcaaatatttgaagttagtatttaattaaccaagggagta |
100 |
Q |
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| T |
44085516 |
tgaaatatacataaaatgagctggaaacagtgattaagctagatttgccattaggcaccagcaaatttttgaagttagtatttaattaaccaagggagta |
44085417 |
T |
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| Q |
101 |
aatnnnnnnnttgaaatccttctgagatatgataggaacattaaaat----tatatatcctagatcttaccatatatattcattggggttgttc-ttttt |
195 |
Q |
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||| ||||||||||||||||||||||||||||||| | ||| ||||||||| |||||| ||| ||||||||||||||||||||| ||||| |
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| T |
44085416 |
aataaaaaaattgaaatccttctgagatatgataggaacataacaattaaatatatatccaagatctaacc--atatattcattggggttgttctttttt |
44085319 |
T |
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| Q |
196 |
tcaggtagctgttgatggagaatcttaccataagacttgcttc |
238 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44085318 |
tcaggtagctgttgatggagaatcttaccataagaattgcttc |
44085276 |
T |
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