View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3371_high_4 (Length: 463)
Name: NF3371_high_4
Description: NF3371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3371_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 161; Significance: 1e-85; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 129 - 408
Target Start/End: Complemental strand, 24358491 - 24358219
Alignment:
| Q |
129 |
gaagaataatctatttctactgcattccggtcaaatatgtgtacatcaaacatggaagttcctccatattcaaacaccaccaaagagccatgtccaagag |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||| | |||||||||||| |||||||||||||||||||||| |
|
|
| T |
24358491 |
gaagaataatctatttctactgcattccggccaaaaatgtgtacatcaaacttggaagttcttttatattcaaacacaaccaaagagccatgtccaagag |
24358392 |
T |
|
| Q |
229 |
agtaattttctgtaaaaagtttccaacccttttcaaaccaaatttcaccattgacttttttccagtaaattttccatttagtgccatcaggaggctttat |
328 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||| || ||||||| ||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
24358391 |
agtaattttcagtaaaatatttccaacccttttcaaaccaaatctcgccattgatttttttccaataaactttccatttagtgccatcaggaggctttat |
24358292 |
T |
|
| Q |
329 |
caacactggattagatagacatagaccaactccatgtctcctagtaaacttacttggtatctgctgtaaaaattaaagaa |
408 |
Q |
| |
|
|||||||||||| | ||| | |||||||| |||||||||||||||| ||||||| ||||| ||||||||||||| |
|
|
| T |
24358291 |
caacactggatttg------ataaatgaactccatatctcctagtaaacttatttggtatttgctg-aaaaattaaagaa |
24358219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 134 - 445
Target Start/End: Original strand, 24364808 - 24365113
Alignment:
| Q |
134 |
ataatctatttctactgcattccggtcaaatatgtgtacatcaaacatggaagttcctccatattcaaacaccaccaaagagccatgtccaagagagtaa |
233 |
Q |
| |
|
|||||||||||||||||||||| || ||| ||| |||||||||| ||||||||||| ||||||||||| ||||||| |||||||| ||||||||||| |
|
|
| T |
24364808 |
ataatctatttctactgcattctggccaagtattactacatcaaacttggaagttcctttatattcaaacatcaccaaacagccatgttcaagagagtaa |
24364907 |
T |
|
| Q |
234 |
ttttctgtaaaaagtttccaacccttttcaaaccaaatttcaccattgacttttttccagtaaattttccatttagtgccatcaggaggctttatcaaca |
333 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||| || || ||||||| ||||||||| |||| ||||||| ||||||||||||| |||| ||||||| |
|
|
| T |
24364908 |
ttttcagtaaaagttttccaacccttttcaaaccacatctcgccattgatttttttccaataaactttccatccagtgccatcaggaagcttgatcaaca |
24365007 |
T |
|
| Q |
334 |
ctggattagatagacatagaccaactccatgtctcctagtaaacttacttggtatctgctgtaaaaattaaagaacccctttagtcactaagcaaagggt |
433 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||| |||| |||| |||||||| ||| |
|
|
| T |
24365008 |
ctggattag------atagaccaactccatgtttcctagtaaacttatttggtaattgctgtaaaaattaaagaacctctttggtcaataagcaaaaggt |
24365101 |
T |
|
| Q |
434 |
ctcaaatataaa |
445 |
Q |
| |
|
||||||||||| |
|
|
| T |
24365102 |
gtcaaatataaa |
24365113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 170 - 416
Target Start/End: Complemental strand, 24369803 - 24369563
Alignment:
| Q |
170 |
tacatcaaacatggaagttcctccatattcaaacaccaccaaagagccatgtccaagagagtaattttctgtaaaaagtttccaacccttttcaaaccaa |
269 |
Q |
| |
|
|||||||||| || |||||||| |||||||||||||||||| | ||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
24369803 |
tacatcaaacttgaaagttcctttatattcaaacaccaccaagcaaccatgtccaagagagtaattttcagtaaaagttttccaacccttttcaaaccaa |
24369704 |
T |
|
| Q |
270 |
atttcaccattgacttttttccagtaaattttccatttagtgccatcaggaggctttatcaacactggattagatagacatagaccaactccatgtctcc |
369 |
Q |
| |
|
|| |||||||||| ||||||||| |||| ||||||||||||| ||||||||| |||||||| ||||||||| | |||||||||||||||||||| |
|
|
| T |
24369703 |
atctcaccattgatttttttccaataaactttccatttagtgtcatcaggagtctttatcaccactggatttg------atagaccaactccatgtctct |
24369610 |
T |
|
| Q |
370 |
tagtaaacttacttggtatctgctgtaaaaattaaagaaccccttta |
416 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24369609 |
ttgtaaacttacttggtatttgctgtaaaaattaaagaaccccttta |
24369563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 129 - 401
Target Start/End: Complemental strand, 24313994 - 24313727
Alignment:
| Q |
129 |
gaagaataatctatttctactgcattccggtcaaatatgtgtacatcaaacatggaagttcctccatattcaaacaccaccaaagagccatgtccaagag |
228 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| |||| ||||||||||| | ||||||||| ||||| |||| |||||| | ||||||||||||| |
|
|
| T |
24313994 |
gaagaataatctatttctagtgcattctggtcaagtatgagtacatcaaactttgaagttcctttatatttgaacattaccaaacacccatgtccaagag |
24313895 |
T |
|
| Q |
229 |
agtaattttctgtaaaaagtttccaacccttttcaaaccaaatttcaccattga-cttttttccagtaaattttccatttagtgccatcaggaggcttta |
327 |
Q |
| |
|
|||||||||| ||||||| |||||||||| ||||||||||||| |||||||||| ||||||||| || | ||||||||||||||||||||||||||||| |
|
|
| T |
24313894 |
agtaattttcagtaaaaaatttccaacccctttcaaaccaaatctcaccattgattttttttccaatacactttccatttagtgccatcaggaggcttta |
24313795 |
T |
|
| Q |
328 |
tcaacactggattagatagacatagaccaactccatgtctcctagtaaacttacttggtatctgctgtaaaaat |
401 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||| ||||| ||| ||||||| |||||||||||| |
|
|
| T |
24313794 |
tcaacactggatttg------atagaccaactccatgtctccttgtaaaattatttggtatttgctgtaaaaat |
24313727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 138 - 415
Target Start/End: Complemental strand, 24354820 - 24354549
Alignment:
| Q |
138 |
tctatttctactgcattccggtcaaatatgtgtacatcaaacatggaagttcctccatattcaaacaccaccaaagagccatgtccaagagagtaatttt |
237 |
Q |
| |
|
|||||||||||||||||| || ||| |||||||||||||||| | ||| |||| ||||| |||||||||||| | |||||||||||||||||||||| |
|
|
| T |
24354820 |
tctatttctactgcattctggccaagtatgtgtacatcaaactttgaatctcctttatatttgaacaccaccaaacaaccatgtccaagagagtaatttt |
24354721 |
T |
|
| Q |
238 |
ctgtaaaaagtttccaacccttttcaaaccaaatttcaccattgacttttttccagtaaattttccatttagtgccatcaggaggctttatcaacactgg |
337 |
Q |
| |
|
| ||||| |||||||||||||||||||||||| || ||||||| ||||||||| |||| |||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
24354720 |
caataaaatatttccaacccttttcaaaccaaatctctccattgatttttttccaataaactttccatttagtgccatctggaggcttgatcaacactgg |
24354621 |
T |
|
| Q |
338 |
attagatagacatagaccaactccatgtctcctagtaaacttacttggtatctgctgtaaaaattaaagaaccccttt |
415 |
Q |
| |
|
||| | ||||||||||||||||| |||| ||||||||| |||| || | |||||||||||||||||||||||| |
|
|
| T |
24354620 |
atttg------atagaccaactccatgtttccttgtaaacttatttggaattttctgtaaaaattaaagaaccccttt |
24354549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 138 - 405
Target Start/End: Complemental strand, 24344548 - 24344287
Alignment:
| Q |
138 |
tctatttctactgcattccggtcaaatatgtgtacatcaaacatggaagttcctccatattcaaacaccaccaaagagccatgtccaagagagtaatttt |
237 |
Q |
| |
|
|||||||||||||||||||| ||| ||| ||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24344548 |
tctatttctactgcattccgaccaagtattactacatcaaatttcgaagttcctttatattcaaacaccaccaaagagccatgtccaagagagtaatttt |
24344449 |
T |
|
| Q |
238 |
ctgtaaaaagtttccaacccttttcaaaccaaatttcaccattgacttttttccagtaaattttccatttagtgccatcaggaggctttatcaacactgg |
337 |
Q |
| |
|
| |||||| |||||||||||||||||||||||| ||||||| || ||||||||| |||| |||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
24344448 |
cagtaaaatatttccaacccttttcaaaccaaatctcaccatcgatttttttccaataaactttccatttagtgccatctggaggcttgatcaacactgg |
24344349 |
T |
|
| Q |
338 |
attagatagacatagaccaactccatgtctcctagtaaacttacttggtatctgctgtaaaaattaaa |
405 |
Q |
| |
|
||| | ||||||||||||||||| || | ||||||||| |||||| | |||||||||||||| |
|
|
| T |
24344348 |
atttg------atagaccaactccatgtttctttgtaaacttatgtggtattttctgtaaaaattaaa |
24344287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 169 - 401
Target Start/End: Complemental strand, 24351704 - 24351478
Alignment:
| Q |
169 |
gtacatcaaacatggaagttcctccatattcaaacaccaccaaagagccatgtccaagagagtaattttctgtaaaaagtttccaacccttttcaaacca |
268 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||||||||||| | |||||| |||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
24351704 |
gtacatcaaacttggaagttcctttatatttaaacaccaccaaacatccatgttgtagagagtaattttcagtaaaatgtttccaacccttttcaaacca |
24351605 |
T |
|
| Q |
269 |
aatttcaccattgacttttttccagtaaattttccatttagtgccatcaggaggctttatcaacactggattagatagacatagaccaactccatgtctc |
368 |
Q |
| |
|
||| |||||||||| |||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||| | |||||||||||||| |||| |
|
|
| T |
24351604 |
aatctcaccattgatttttttccagtaaactttccatttagtgccatcaggagccttgatcaacactggatttg------ttagaccaactccatatctc |
24351511 |
T |
|
| Q |
369 |
ctagtaaacttacttggtatctgctgtaaaaat |
401 |
Q |
| |
|
|| ||||| ||| ||||||| |||||||||||| |
|
|
| T |
24351510 |
cttgtaaaattatttggtatttgctgtaaaaat |
24351478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 138 - 420
Target Start/End: Complemental strand, 24362176 - 24361897
Alignment:
| Q |
138 |
tctatttctactgcattccggtcaaatatgtgtacatcaaacatggaagttcctcc---atattcaaacaccaccaaagagccatgtccaagagagtaat |
234 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||||| ||| | ||||||||| | ||| | ||||| ||||||| | ||||||||||||||||||| |
|
|
| T |
24362176 |
tctatttctactgcattcttgccaagtatgtgtacaaggaacttagaagttccttcttcataattaaacaacaccaaaaacccatgtccaagagagtaat |
24362077 |
T |
|
| Q |
235 |
tttctgtaaaaagtttccaacccttttcaaaccaaatttcaccattgacttttttccagtaaattttccatttagtgccatcaggaggctttatcaacac |
334 |
Q |
| |
|
|||| |||||| ||||||||||||||| |||||||| |||||||||| ||||||||| |||| |||||||||||| |||||||||||||| |||||||| |
|
|
| T |
24362076 |
tttcagtaaaagttttccaacccttttcgaaccaaatctcaccattgatttttttccaataaactttccatttagttccatcaggaggcttgatcaacac |
24361977 |
T |
|
| Q |
335 |
tggattagatagacatagaccaactccatgtctcctagtaaacttacttggtatctgctgtaaaaattaaagaacccctttagtca |
420 |
Q |
| |
|
|||||| | | |||||||||||||||||||| ||||||| | ||||||| | |||||||| ||||| ||||| ||| |||| |
|
|
| T |
24361976 |
tggatttg------acagaccaactccatgtctccttgtaaactcatttggtattttctgtaaaatttaaacaacccttttggtca |
24361897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 24364683 - 24364727
Alignment:
| Q |
9 |
gaaatgaaaggcgatctttgtctagccttcttccgattaagccat |
53 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24364683 |
gaaataaaaggtgatctttgtctagccttcttccgattaagccat |
24364727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 24369958 - 24369920
Alignment:
| Q |
15 |
aaaggcgatctttgtctagccttcttccgattaagccat |
53 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24369958 |
aaaggtgatctttgtctagccttcttccgattaagccat |
24369920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 24354946 - 24354902
Alignment:
| Q |
9 |
gaaatgaaaggcgatctttgtctagccttcttccgattaagccat |
53 |
Q |
| |
|
|||| |||||| |||||||||||||| |||||| ||||||||||| |
|
|
| T |
24354946 |
gaaacgaaaggtgatctttgtctagcattcttctgattaagccat |
24354902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 24358608 - 24358564
Alignment:
| Q |
9 |
gaaatgaaaggcgatctttgtctagccttcttccgattaagccat |
53 |
Q |
| |
|
|||| |||||| ||||||||| |||||||||||| |||||||||| |
|
|
| T |
24358608 |
gaaacgaaaggtgatctttgtttagccttcttccaattaagccat |
24358564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University