View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3371_high_9 (Length: 384)
Name: NF3371_high_9
Description: NF3371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3371_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 1680322 - 1680695
Alignment:
| Q |
1 |
tcaccagtccggacactgtcattttgcaggacttcatacgacaaatcaacattaggaaagcgattacaaaagcgagcaatgtcaaataagtatgaatttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1680322 |
tcaccagtccggacactgtcattttgcaggacttcatactacaaatcaacattaggaaagcgattacaaaagcgagcaatgtcaaataagtatgaatttg |
1680421 |
T |
|
| Q |
101 |
gcatgtttaacaattcacgccttgcaacatcttccatcttcaataaatcaaagatggtttctatactcttccctgggttctcctcgcatttcttagccaa |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1680422 |
gcatgtttaacaattcacgcctcgcaacatcttccatcttcaataaatcaaagatggtttctatactcttccctgggttctcctcgcatttcttagccaa |
1680521 |
T |
|
| Q |
201 |
atcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccccacaatccttgtgtcaccatttgactaacttccatagcaagaagagccaaactc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1680522 |
atcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccccacaatccttgtgtcatcatttgactaacttccatagcaagaagagccaaactc |
1680621 |
T |
|
| Q |
301 |
agccaaccattgctcgatattacatccaccattgcctgaagcagtttatttgcagaaagcaacacctctctctg |
374 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1680622 |
agccaaccattgctcgatattacatccaccaatgcctgaagcagtttatttgcagaaagcaacacctctctctg |
1680695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 2800406 - 2800033
Alignment:
| Q |
1 |
tcaccagtccggacactgtcattttgcaggacttcatacgacaaatcaacattaggaaagcgattacaaaagcgagcaatgtcaaataagtatgaatttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2800406 |
tcaccagtccggacactgtcattttgcaggacttcatacaacaaatcaacattaggaaagcgattacaaaagcgagcaatgtcaaataagtatgaatttg |
2800307 |
T |
|
| Q |
101 |
gcatgtttaacaattcacgccttgcaacatcttccatcttcaataaatcaaagatggtttctatactcttccctgggttctcctcgcatttcttagccaa |
200 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2800306 |
gcatgtttaacaattcacgcctcgcaacatcttccatcttcaataaatcaaagatggtttctatactcttccctgggttctcctcgcatttcttagccaa |
2800207 |
T |
|
| Q |
201 |
atcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccccacaatccttgtgtcaccatttgactaacttccatagcaagaagagccaaactc |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2800206 |
atcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccccacaatccttgtgtcaacatttgactaacttccatagcaagaagagccaaactc |
2800107 |
T |
|
| Q |
301 |
agccaaccattgctcgatattacatccaccattgcctgaagcagtttatttgcagaaagcaacacctctctctg |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2800106 |
agccaaccattgctcgatattacatccaccaatgcctgaagcagtttatttgcagaaagcaacacctctctctg |
2800033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 6e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 95 - 331
Target Start/End: Complemental strand, 40469833 - 40469599
Alignment:
| Q |
95 |
aatttggcatgtttaacaattcacgccttgcaacatcttccatcttcaataaatcaaagatggtttctatactcttccctgggttctcctcgcatttctt |
194 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||| ||| || |||||||||||||||| | |
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| T |
40469833 |
aatttggcatgtttaacaattcacgcctcgcaacatcttccatctccaataaatcaaagatggcttctatactcgtccatgagttctcctcgcatttcct |
40469734 |
T |
|
| Q |
195 |
agccaaatcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccccacaatccttgtgtcaccatttgactaacttccatagcaagaagagcc |
294 |
Q |
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| ||||||| |||||||| ||||||||| ||||| |||||||||| | ||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
40469733 |
acccaaatcttttgtgaagtgaggaagtcgtagctgcatagagtcgcatccccacaatccttgtgtcaccatttgactaacttcc--aacaagaagagcc |
40469636 |
T |
|
| Q |
295 |
aaactcagccaaccattgctcgatattacatccacca |
331 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||| |
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|
| T |
40469635 |
aaactcaggcaaccattgcttgatattacatccacca |
40469599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 40 - 374
Target Start/End: Complemental strand, 29269543 - 29269209
Alignment:
| Q |
40 |
gacaaatcaacattaggaaagcgattacaaaagcgagcaatgtcaaataagtatgaatttggcatgtttaacaattcacgccttgcaacatcttccatct |
139 |
Q |
| |
|
|||| ||||| ||||||||| || || ||||| |||||||| || || | | |||| || |||||| |||||||| || || || |||||||||||| |
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| T |
29269543 |
gacagatcaatattaggaaaacggttgcaaaaccgagcaatatccaaaagctgagaatctgtcatgttcaacaattcccgtctctcatcatcttccatct |
29269444 |
T |
|
| Q |
140 |
tcaataaatcaaagatggtttctatactcttccctgggttctcctcgcatttcttagccaaatcctttgtgaaatgaggaagttgtagcagcatagagtc |
239 |
Q |
| |
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||||||||||| | |||||||||||| ||||||||||||||| |||||||||||| |||||||||||||| || ||||| |||||||||||||| || |
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| T |
29269443 |
ctaataaatcaaataccgtttctatactcctccctgggttctcctggcatttcttagctaaatcctttgtgaagtgtggaagctgtagcagcatagaatc |
29269344 |
T |
|
| Q |
240 |
acgtccccacaatccttgtgtcaccatttgactaacttccatagcaagaagagccaaactcagccaaccattgctcgatattacatccaccattgcctga |
339 |
Q |
| |
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|| |||||| |||||| || |||||||| || || ||||| ||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
29269343 |
tcgctcccacattccttgggttaccatttggcttacctccatggcaagaagagccatgctcagccaaccgttgctcgatattacatcaaccattgcctgc |
29269244 |
T |
|
| Q |
340 |
agcagtttatttgcagaaagcaacacctctctctg |
374 |
Q |
| |
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|| || | ||||||||||||| ||||| ||||| |
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|
| T |
29269243 |
agaagcctgtttgcagaaagcagtacctccctctg |
29269209 |
T |
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