View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3371_low_1 (Length: 638)
Name: NF3371_low_1
Description: NF3371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3371_low_1 |
 | |
|
| [»] chr2 (9 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 596; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 7 - 638
Target Start/End: Complemental strand, 39840751 - 39840125
Alignment:
| Q |
7 |
aatattgaaaaaatgacaaacaatctggtgataagattaaaataaattaccaagtgctggtccctttgatcctgatttgaataacctttatgaaatcaat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39840751 |
aatattgaaaaaatgacaaacaatctggtgataagattaaaataaattaccaagtgctggtccctttgatcccgatttgaataacctttatgaaatcaat |
39840652 |
T |
|
| Q |
107 |
aaccagtctgagatctcttttgctatacacataggcttcgaaagttgcatattccttgtcagcattcatggcttgaaatgtgataatgtaaaggaaacca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39840651 |
aaccagtctgagatctcttttgctatacacataggcttcgaaagttgcatattccttgtcagcattcatggcttgaaatgtgataatgtaaaggaaacca |
39840552 |
T |
|
| Q |
207 |
ttaaccatttgcgaaataaactcatcaataacgaccaattggtagtggttctgagtttgtgaattataatcttgtattgccaaagtggcacatttggtta |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39840551 |
ttaaccatttgcgaaataaactcatcaataacgaccaattggtagtggttctgagtttgtgaattataatcttgtattgccaaagtggcacatttggtta |
39840452 |
T |
|
| Q |
307 |
tcctatcctttttgataggatctttgatctcattaaaatctgatagaaaagtagagaaaggaacaattaatcatggattaaattagctacaattgaagtg |
406 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39840451 |
tcctatccttttcgataggatctttgatctcattaaaatctgatagaaaagtagagaaaggaacaattaatcatggattaaattagctacaattgaagtg |
39840352 |
T |
|
| Q |
407 |
taaggaatgaatagtgaatcaacataacataacataactaacgaacagactcaccagttggtaacagatattgactagttgcgcttcttctgcgggagct |
506 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39840351 |
taaggaatgaatagtgaatcaacataaca-----taactaacgaacagactcaccagttggtaacagatattgactagttgcgcttcttctgcgggagct |
39840257 |
T |
|
| Q |
507 |
tattctgcggggtttcagaggagcagcgggcattttttgacgtgcgtctgagagagaataagaaagaagaaccaattatgatagttatagaaattagaca |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39840256 |
tattctgcggggtttcagaggagcagcgggcattttttgacgtacgtctgagagagaataagaaagaagaaccaattatgatagttatagaaattagaca |
39840157 |
T |
|
| Q |
607 |
acaataagataagtgtgaattggggcttaggg |
638 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |
|
|
| T |
39840156 |
acgataagataagtgtgaattggggcttaggg |
39840125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 399
Target Start/End: Complemental strand, 35162490 - 35162105
Alignment:
| Q |
11 |
ttgaaaaaatgacaaacaatctggtgataagattaaaataaattaccaagtgctggtccctttgatcctgatttgaataacctttatgaaatcaataacc |
110 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| | ||||| |
|
|
| T |
35162490 |
ttgaaaaaatgagaaacaatctggtgataagattaaaataaattaccaagtactggtccctttgatcctgattctaataacctttcttaaatc------- |
35162398 |
T |
|
| Q |
111 |
agtctgagatctcttttgctatacacata------ggcttcgaaagttgcatattccttgtcagcattcatggcttgaaatgtgataatgtaaaggaaac |
204 |
Q |
| |
|
|| |||||||| | ||| || | ||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||| |
|
|
| T |
35162397 |
-----gaactctctttttccatatccaaacactatggcttcgaaagttgcatattccttgtcagcattgctggcttgaaaggtgatacagtaaaggaaac |
35162303 |
T |
|
| Q |
205 |
cattaaccatttgcgaaataaactcatcaataacgaccaattggtagtggttctgagtttgtgaattataatcttgtattgccaaagtggcacatttggt |
304 |
Q |
| |
|
||||||| | ||| ||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35162302 |
cattaacaaattgtgaagtaaacgtatcaacaacgaccaattggtagtcgttctgagtttgtgaattataatcccgtattgccaaagtggcacatttggt |
35162203 |
T |
|
| Q |
305 |
tatcctatcctttttgataggatctttgatctcattaaaatctgatagaaaagtagagaaaggaacaattaatcat---ggattaaattagctacaat |
399 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
35162202 |
tatcctatcctttttggtaggatctttgatatcattaaaatctgatagaaaagtagagaaaggaaaaattaatcatcgatgattaaattagctacaat |
35162105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 199 - 399
Target Start/End: Original strand, 44630826 - 44631029
Alignment:
| Q |
199 |
ggaaaccattaaccatttgcgaaataaactcatcaataacgaccaattggtagtggttctgagtttgtgaattataatcttgtattgccaaagtggcaca |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44630826 |
ggaaaccattaaccatttgcgaaataaactcatcattaacgaccaattggtagtggttctgagtttgtgaattataatcccgtattgccaaagtggcaca |
44630925 |
T |
|
| Q |
299 |
tttggttatcctatcctttttgataggatctttgatctcattaaaatctgatagaaaagtagagaaaggaacaattaatcat---ggattaaattagcta |
395 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
44630926 |
tttggttatcctatcctttttggtaggatctttgatctcattaaaatctgatagaaaagtagagaaaggaaaaattaatcatagatgattaaattagcta |
44631025 |
T |
|
| Q |
396 |
caat |
399 |
Q |
| |
|
|||| |
|
|
| T |
44631026 |
caat |
44631029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 8 - 399
Target Start/End: Complemental strand, 39845717 - 39845311
Alignment:
| Q |
8 |
atattgaaaaaatgacaaacaatctggtgataagattaaaataaattaccaagtgctggtccctttgatcctgatttgaataacctttatgaaatc--aa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| || || |||| ||| || || |
|
|
| T |
39845717 |
atattgaaaaaatgacaaacaatctggtgataagattaaaataaattaccaagtactggtcccttccatcctgattctaaaaaactttctgagattcaaa |
39845618 |
T |
|
| Q |
106 |
taaccagtctgagatctcttttgcta------tacacataggcttcgaaagttgcatattccttgtcagcattcatggcttgaaatgtgataatgtaaag |
199 |
Q |
| |
|
||| || ||||||||| | | ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39845617 |
taatcata-----atctctttttccaaatccatacacatgggcttcaaaagttgcatattccttgtcagcattcatggcttgaaatgtgatacggtaaag |
39845523 |
T |
|
| Q |
200 |
gaaaccattaaccatttgcgaaataaactcatcaataacgaccaattggtagtggttctgagtttgtgaattataatcttgtattgccaaagtggcacat |
299 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
39845522 |
gaaacaattaaccatttgcgaaataaactcatcattaacgaccaattggtagtcgttccgagtttgtgaattataatcccgtattgccaaagtgacacat |
39845423 |
T |
|
| Q |
300 |
ttggttatcctatcc------------tttttgataggatctttgatctcattaaaatctgatagaaaagtagagaaaggaacaattaatcatggattaa |
387 |
Q |
| |
|
||| | | ||||||| |||| ||| ||| || ||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39845422 |
ttgataagcctatccttttcgatttgattttcgattcgattttcgatttgattaaaatctgatagaaaagtagagaaaggaacaattaatcatcgattaa |
39845323 |
T |
|
| Q |
388 |
attagctacaat |
399 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
39845322 |
attaactacaat |
39845311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 140 - 399
Target Start/End: Original strand, 44797747 - 44798009
Alignment:
| Q |
140 |
ggcttcgaaagttgcatattccttgtcagcattcatggcttgaaatgtgataatgtaaaggaaaccattaaccatttgcgaaataaactcatcaataacg |
239 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||| |||||| |||||||||||| ||||| | ||||| ||||| ||||| |||| |
|
|
| T |
44797747 |
ggcttcgaaagttgcatattccacgtcagcattgctggcttgaaaggtgataccgtaaaggaaaccgttaacatatcgcgaagtaaacgtatcaacaacg |
44797846 |
T |
|
| Q |
240 |
accaattggtagtggttctgagtttgtgaattataatcttgtattgccaaagtggcacatttggttatcctatcctttttgataggatctttgatctcat |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44797847 |
accaattggtagtggttctgagtttgtgaattataatcccgtattgccaaagtggcacatttggttatcctatcctttttggtaggatctttgatctcat |
44797946 |
T |
|
| Q |
340 |
taaaatctgatagaaaagtagagaaaggaacaattaatcat---ggattaaattagctacaat |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
44797947 |
taaaatctgatagaaaagtagagaaaggaaaaattaatcatagatgattaaattagctacaat |
44798009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 504 - 603
Target Start/End: Complemental strand, 39845143 - 39845046
Alignment:
| Q |
504 |
gcttattctgcggggtttcagaggagcagcgggcattttttgacgtgcgtctgagagagaataagaaagaagaaccaattatgatagttatagaaattag |
603 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||| || ||||||| ||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39845143 |
gcttcttctgcggggtttcagaggagcagcaggcattttttgatgtacgtctgaaaga--ataagaaagaagaagcaattatgatagttatagaaattag |
39845046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 44797621 - 44797708
Alignment:
| Q |
8 |
atattgaaaaaatgacaaacaatctggtgataagattaaaataaattaccaagtgctggtccctttgatcctgatttgaataaccttt |
95 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||| |
|
|
| T |
44797621 |
atattgaaaaaatgagaaacaatctggtgataagattaaaataaattaccaagtactggtcccttccatcctgattataataaccttt |
44797708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 536 - 587
Target Start/End: Original strand, 44631200 - 44631251
Alignment:
| Q |
536 |
gcattttttgacgtgcgtctgagagagaataagaaagaagaaccaattatga |
587 |
Q |
| |
|
||||||||||| || ||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
44631200 |
gcattttttgatgtacgtctgagagagaataataaagaagaagcaattatga |
44631251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 536 - 587
Target Start/End: Original strand, 44798180 - 44798231
Alignment:
| Q |
536 |
gcattttttgacgtgcgtctgagagagaataagaaagaagaaccaattatga |
587 |
Q |
| |
|
||||||||||| || ||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
44798180 |
gcattttttgatgtacgtctgagagagaataataaagaagaagcaattatga |
44798231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University