View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3371_low_12 (Length: 368)
Name: NF3371_low_12
Description: NF3371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3371_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 32955922 - 32955629
Alignment:
| Q |
1 |
caaccacagagtcaaatgtatggcaatgagctacgtttcatggatgattcagatgcagaatcagaaaatggcattcctaatttcctttcttggagactca |
100 |
Q |
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| T |
32955922 |
caaccacagagtcaaatgtatggcaatgagctacgtttcatggatgattcagatgcagaatcagaaaatggcattcctaatttcctttcttggagactca |
32955823 |
T |
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| Q |
101 |
acacaagtcttgttcacgattacacaagatgaagcattggaattagaagttacgatgatattgatgatgatgacgacataagcttaatattcctaagata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| | || |
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| T |
32955822 |
acacaagtcttgttcacgattacacaagatgaagcattggaattagaagtt---------------atgatgatgacataagcttaatattcctacgtta |
32955738 |
T |
|
| Q |
201 |
atagaacagaaagaagacaaaaaatgatgatgtagatgtaggtgtacgacaatgttttacgatgtagatgtttttgattgtgatggttatgttatggtct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32955737 |
atagaacagaaagaagacaaaaaatgatgatgtagatgtaggtgtacgacaatgttttacgatgtagatgtttttgattgtgatggttatgttatggtct |
32955638 |
T |
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