View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3371_low_15 (Length: 326)
Name: NF3371_low_15
Description: NF3371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3371_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 21 - 323
Target Start/End: Complemental strand, 36121192 - 36120889
Alignment:
| Q |
21 |
aagctgcctacaagttcgagaaagtttcagtcatgtttctgtaccaac-cccgctcttttgttaaactgaaccaattgaattgttaaccctcaaaacaaa |
119 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36121192 |
aagctgcctacaagtttgagaaagtttcagtcatgtttatgtaccaatacccgctcttttgttaaactgaaccaattgaatggttaaccctcaaaacaaa |
36121093 |
T |
|
| Q |
120 |
aataatatttgtaatcctgacaccctaagctttccaatgagtggtcatttgctcaaaatggatatcgtttggtattttaattaaattgtgaaagttaagg |
219 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||| ||||||||||||||||||||||||||||| |
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| T |
36121092 |
aattatatttgtaatcctgacaccctaagctttccaatgagtggtcgtttgctcaaaacggatattgtttagtattttaattaaattgtgaaagttaagg |
36120993 |
T |
|
| Q |
220 |
tactgatgctggaatttgcagggtggaccctgcgggtttgacatagccatacaaatcagtaagtgagatgttcggaacaaaaggatcgtcttttcatatc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| || |
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| T |
36120992 |
tactgatgctggaatttgcagggtggaccctgcgggtttgacatagccatacaaaccggtaagtgagatgttcggaacatgaggatcgtcttttcatgtc |
36120893 |
T |
|
| Q |
320 |
actc |
323 |
Q |
| |
|
|||| |
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| T |
36120892 |
actc |
36120889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 323
Target Start/End: Complemental strand, 40566793 - 40566490
Alignment:
| Q |
21 |
aagctgcctacaagttcgagaaagtttcagtcatgtttctgtaccaac-cccgctcttttgttaaactgaaccaattgaattgttaaccctcaaaacaaa |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40566793 |
aagctgcctacaagtttgagaaagtttcagtcatgtttatgtaccaatacccgctcttttgttaaactgaaccaattgaatggttaaccctcaaaacaaa |
40566694 |
T |
|
| Q |
120 |
aataatatttgtaatcctgacaccctaagctttccaatgagtggtcatttgctcaaaatggatatcgtttggtattttaattaaattgtgaaagttaagg |
219 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| |||| ||||||||||||||||||||||||||||| |
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|
| T |
40566693 |
aattatatttgtaatcctgacaccctaagctttccaatgagtggtcgttagctcaaaacggatattgtttagtattttaattaaattgtgaaagttaagg |
40566594 |
T |
|
| Q |
220 |
tactgatgctggaatttgcagggtggaccctgcgggtttgacatagccatacaaatcagtaagtgagatgttcggaacaaaaggatcgtcttttcatatc |
319 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| || |
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|
| T |
40566593 |
tactgatgctggaatttgcagggtggaccctgcaggtttgacatagccatacaaaccggtaagtgagatgttcggaacatgaggatcgtcttttcatgtc |
40566494 |
T |
|
| Q |
320 |
actc |
323 |
Q |
| |
|
|||| |
|
|
| T |
40566493 |
actc |
40566490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 34697102 - 34697146
Alignment:
| Q |
178 |
tggatatcgtttggtattttaattaaattgtgaaagttaaggtac |
222 |
Q |
| |
|
||||||||||||| ||||||||||||||| | ||| ||||||||| |
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|
| T |
34697102 |
tggatatcgtttgatattttaattaaattttcaaatttaaggtac |
34697146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 34719514 - 34719558
Alignment:
| Q |
178 |
tggatatcgtttggtattttaattaaattgtgaaagttaaggtac |
222 |
Q |
| |
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||||||||||||| ||||||||||||||| | ||| ||||||||| |
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|
| T |
34719514 |
tggatatcgtttgatattttaattaaattttcaaatttaaggtac |
34719558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 21 - 323
Target Start/End: Original strand, 38812070 - 38812378
Alignment:
| Q |
21 |
aagctgcctacaagttcgagaaagtttcagtcatgtttctgtaccaac-cccgctcttttgttaaactgaaccaattgaattgttaaccctcaaaacaaa |
119 |
Q |
| |
|
||||| |||||||||| ||||||||||| ||||||||||||||| || ||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38812070 |
aagctccctacaagtttgagaaagtttcggtcatgtttctgtacaaatacccactcttttgttaaactgaaccaattgaatggttaaccctcaaaacaaa |
38812169 |
T |
|
| Q |
120 |
aataatatttgtaatcctgacaccctaagctttccaatgagtggtcatttgctcaaaatggatatcgtttggtattttaattaaattgtgaaagttaagg |
219 |
Q |
| |
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||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38812170 |
aattatatttgtaatcctgacaccctacgctttccaatgagtggtcgtttgctcaaaacggatatcatttggtattttaattaaattgtgaaagttaagg |
38812269 |
T |
|
| Q |
220 |
tactgatgctggaatttgcagggtggaccctgcgggtttgacat-----agccatacaaatcagtaagtgagatgttcggaacaaaaggatcgtcttttc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||| ||||| |||||||| |
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| T |
38812270 |
tactgatgctggaatttgcagggtggaccctgcgggtttgacatatgtgagccatacaaaccggtaagtgagatgttcggaacatgaggatagtcttttc |
38812369 |
T |
|
| Q |
315 |
atatcactc |
323 |
Q |
| |
|
|| |||||| |
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|
| T |
38812370 |
atgtcactc |
38812378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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