View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3371_low_16 (Length: 294)
Name: NF3371_low_16
Description: NF3371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3371_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 2956295 - 2956021
Alignment:
| Q |
1 |
acaaaccaagaaccgcactcaaaggcacccaaatacaactccctagcatactatcggttccaacagatagtatgttccacaaccacttgtaatgggaacc |
100 |
Q |
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| T |
2956295 |
acaaaccaagaaccgcactcaaaggcacccaaatacaactccctagcatactatcggttccaacagatagtatgttccacaaccacttgtaatgggaacc |
2956196 |
T |
|
| Q |
101 |
cggatggaacgataagctatttcatccaatcaaagaaattgaagcacattgattaatgtttaaaccatttcatcaagatagaagcttttgtaccaaggac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
2956195 |
cggatggaacgataagctatttcatccaatcaaagaaattgaagcacattgattaatgtttaaaccgtttcatctagatagaagcttttgtaccaaggac |
2956096 |
T |
|
| Q |
201 |
aacaaataacataatcagttaacagccaaatcatcttatcaatgctttaaagccaaatcatttggatgatgagca |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2956095 |
aacaaataacataatcagttaacagccaaatcatcttatcaatgctttaaagccaaatcatttggatgatgagca |
2956021 |
T |
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