View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3371_low_17 (Length: 282)
Name: NF3371_low_17
Description: NF3371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3371_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 277
Target Start/End: Original strand, 9214138 - 9214397
Alignment:
| Q |
20 |
tgaatagattagagaaaaggacactaatgg-------attatcaatttgatctcttacaattacaacctattctatcaaacctcagtcgtttcgtttgat |
112 |
Q |
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| T |
9214138 |
tgaatagattagagaaaaggacattaatggtcaatggattatcaatttgatctcttacaattacaacctattctatcaaacctcagtcgt-----ttgat |
9214232 |
T |
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| Q |
113 |
tgatctaatggctaagagtattattatatctcttagacttatgacaatcaacaataatttaacatagtgtttgagaattgaattagaacctgatccaact |
212 |
Q |
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| T |
9214233 |
tgatctaatggctaagagtattattatatctcttagacttatgacaatcaacaataatttaacatagtgtttgagaattgaattagaacctgatccaact |
9214332 |
T |
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| Q |
213 |
ttgtacatataaggtatgttaattgcaccaggagcgtgtccagcattaaactcttctgtgctcct |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
9214333 |
ttgtacatataaggtatgttaattgcaccaggagcgtgtccagcattaaactcttccgtggtcct |
9214397 |
T |
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