View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3371_low_2 (Length: 616)
Name: NF3371_low_2
Description: NF3371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3371_low_2 |
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| [»] scaffold0568 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 13 - 608
Target Start/End: Complemental strand, 45629595 - 45629002
Alignment:
| Q |
13 |
cacagacagcaaaaacaccagcagcaacagattttgtagcaaacaaaaacatgaggctgc-atataccctcctgcccaaacctgcaacagatcaccgcaa |
111 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45629595 |
cacagacagcaaaaacaccagcagcaaccgattttgtagcaaacaaaaacatgaggctgccatataccctcctgcccaaacctgcaacagatcaccgcaa |
45629496 |
T |
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| Q |
112 |
attttcaaggcatacccaagcctcaaacatatgtctacgaaaagagtctgtttccagctcaattaaatactccccatattttcttgaatgtgataatagc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45629495 |
attttcaaggcatacccaagcctcaaacatatgtctccgaaaagagcctgtttccagctcaattaaataccccccatattttcttgaatgtgataatagc |
45629396 |
T |
|
| Q |
212 |
agcacattccattaaacattcaattggaatgacatataaagtatctgaaaactcaaagctactgcattctaacataaattctaatttatatttttcacta |
311 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45629395 |
agcacattccattaa---ttcaattggaatgacatataaagtacctgaaaactcaaagctactgcattctaacataaattctaatttatatttttcacta |
45629299 |
T |
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| Q |
312 |
tgctcatacacaatgcagttacttctctatttcttacaaaacctcatattacaatgtatcaaaaagcaaacatgttgaaggggagttactctaaatcaaa |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45629298 |
tgctcatacacaatgcagttacttctctatttcttacaaaacctcatattacaatgtatcaaaaagcaaacatgttgaaggggagttacactaaatcaaa |
45629199 |
T |
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| Q |
412 |
agccagtcagactcattccctaatgtagagatggagatcatacaatacttcaagccatttctagttgtcacctgaagacatagaaagtaatcaatttctc |
511 |
Q |
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| T |
45629198 |
aaccagtcaaactcattccctaatgtagagatggagatcatacaatacttcaagccatttctagctgtcacctgaagacatagaaagtaatcaatttctc |
45629099 |
T |
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| Q |
512 |
aaacttgttaaaaaggttttttcaacatttagcaaaaatactctacaagacacatattatgaaatagcaaaacagcacctaattaaatttaatattg |
608 |
Q |
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||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45629098 |
aaacttgttaaaaaggtttttccaatatttagcaaaaatactctacaagacacatattatgaaatagcaaaacagcacctaattaaatttaatattg |
45629002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: scaffold0568
Description:
Target: scaffold0568; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 299
Target Start/End: Original strand, 34 - 318
Alignment:
| Q |
13 |
cacagacagcaaaaacaccagcagcaacagattttgtagcaaacaaaaacatgaggctgc-atataccctcctgcccaaacctgcaacagatcaccgcaa |
111 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34 |
cacagacagcaaaaacaccagcagcaaccgattttgtagcaaacaaaaacatgaggctgccatataccctcctgcccaaacctgcaacagatcaccgcaa |
133 |
T |
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| Q |
112 |
attttcaaggcatacccaagcctcaaacatatgtctacgaaaagagtctgtttccagctcaattaaatactccccatattttcttgaatgtgataatagc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
134 |
attttcaaggcatacccaagcctcaaacatatgtctccgaaaagagcctgtttccagctcaattaaataccccccatattttcttgaatgtgataatagc |
233 |
T |
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| Q |
212 |
agcacattccattaaacattcaattggaatgacatataaagtatctgaaaactcaaagctactgcattctaacataaattctaattta |
299 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
234 |
agcacattccatta---attcaattggaatgacatataaagtacctgaaaactcaaagctactgcattctaacataaattctaattta |
318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 431 - 608
Target Start/End: Original strand, 311 - 488
Alignment:
| Q |
431 |
ctaatgtagagatggagatcatacaatacttcaagccatttctagttgtcacctgaagacatagaaagtaatcaatttctcaaacttgttaaaaaggttt |
530 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
311 |
ctaatttagagatggagatcatacaatacttcaagccatttctagctgtcacctaaagacatagaaagtaatcaatttctcaaacttgttaaaaaggttt |
410 |
T |
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| Q |
531 |
tttcaacatttagcaaaaatactctacaagacacatattatgaaatagcaaaacagcacctaattaaatttaatattg |
608 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
411 |
ttccaacatttagcaaaaatactctacaagacacatattatgaaatagcaaaacagcacctaattaaatttaatattg |
488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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