View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3371_low_26 (Length: 238)
Name: NF3371_low_26
Description: NF3371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3371_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 28 - 222
Target Start/End: Complemental strand, 30784868 - 30784677
Alignment:
| Q |
28 |
caatggatagaaatgtcaattaaataaatatatcttattgtgaatggctttagaatgtaatgatgcaatgaagatccaataaagatggggttatactgaa |
127 |
Q |
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| T |
30784868 |
caatggatagaaatgtcatttaaataaatatatcttattgtgaatggctttagaatgtaatgatgcaatgaagatgcaataaagat-gggttatactgaa |
30784770 |
T |
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| Q |
128 |
ttttggtaaaagtttattgttgggacttgaaggcagatcaatcaaactattacatagtgtgggaaatgactataactgaattcttaacagtatgt |
222 |
Q |
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| T |
30784769 |
ttttggtaaaagtttattgttgggac-tgaatgcagatgaatcaaactattacatagtgtaagaaatgactat-actgaattcttaacagtatgt |
30784677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 45628727 - 45628533
Alignment:
| Q |
17 |
aaatgaattaccaatggatagaaatgtcaattaaataaatatatcttattgtgaatggctttagaatgtaatgatgcaatgaagatccaataaagatggg |
116 |
Q |
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| T |
45628727 |
aaatgaattaccaatggatagaaatgtcattta----------tcttattgtgaatggctttagaatgcaatgatgcaatgaagatccaataaagatggg |
45628638 |
T |
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| Q |
117 |
gttatactgaattttggtaaaagtttattgttgggacttgaaggcagatcaatcaaactattacatagtgtgggaaatgactataactgaattcttaaca |
216 |
Q |
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| T |
45628637 |
-ttatactgaattttggtaaaagtttattgttgggacttggaggcagatgaatcaaactattacatagtgtgggaaatgactataactgaattcttaaca |
45628539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 43903168 - 43903067
Alignment:
| Q |
115 |
gggttatactgaattttggtaaaagtttattgttgggacttgaaggcagatcaatcaaactattacatagtgtgggaaatgactataactgaattcttaa |
214 |
Q |
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| T |
43903168 |
gggttatactgaattttagtaaaagtttattgttggga------ggcagatgaatcaaactattacatagtgtgggaaatgactataaccgaattcttaa |
43903075 |
T |
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| Q |
215 |
cagtatgt |
222 |
Q |
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| T |
43903074 |
cagtatgt |
43903067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 43898815 - 43898716
Alignment:
| Q |
115 |
gggttatactgaattttggtaaaagtttattgttgggacttgaaggcagatcaatcaaactattacatagtgtgggaaatgactataactgaattcttaa |
214 |
Q |
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| T |
43898815 |
gggttatactgaattttcgaaaaagtttattgttggga------ggcagatgaataaaactattaca--gtgtgggaaatgactataactgaattcttaa |
43898724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 29157698 - 29157657
Alignment:
| Q |
24 |
ttaccaatggatagaaatgtcaattaaataaatatatcttat |
65 |
Q |
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| T |
29157698 |
ttaccaatggatagaaatgtcatttaaacaaatatatcttat |
29157657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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