View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3371_low_28 (Length: 236)
Name: NF3371_low_28
Description: NF3371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3371_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 30640008 - 30639787
Alignment:
| Q |
1 |
caaagacaatattttgaagataaatattaaccccaagaaggcttttaattattcggttaacaaatgcttgtagatcaaacgcaagcatccaccaagaatt |
100 |
Q |
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| T |
30640008 |
caaagacaatatttttaagataaatattaaccccaagaaggcttttaattattcggttaacaaatgcttgtagatcaaacgcaagcatccaccaagaatt |
30639909 |
T |
|
| Q |
101 |
ttatgccaatacctatatgccaagaattttatgccaataaagtttctc-aaaagtgtctattttatattaactttaatttgtgttttgaatgtcttcaag |
199 |
Q |
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| T |
30639908 |
ttatgccaatacctatatgccaagaattttatgccaataaagtttctcaaaaagtgtctattttatattaactttaatttgtgttttgaatgtcttcaag |
30639809 |
T |
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| Q |
200 |
ttgtatggttaaatgtcatgtg |
221 |
Q |
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| T |
30639808 |
ttgtatggttaaatgtcatgtg |
30639787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 2258101 - 2258029
Alignment:
| Q |
149 |
aaaagtgtctattttatattaactttaatttgtgttttgaatgtcttcaagttgtatggttaaatgtcatgtg |
221 |
Q |
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| T |
2258101 |
aaaagtgtgtatttcgtattaactttaattcgtgtttagaatatcttcaagttgtatggttaaatggcatgtg |
2258029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 23385395 - 23385332
Alignment:
| Q |
148 |
caaaagtgtctattttatattaactttaatttgtgttttgaatgtcttcaagttgtatggttaa |
211 |
Q |
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||||||||| | |||| || ||||| |||||| ||||||||||||||||||||||||| |||| |
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| T |
23385395 |
caaaagtgtgtgttttgtaacaacttaaatttgagttttgaatgtcttcaagttgtatgattaa |
23385332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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