View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3371_low_3 (Length: 579)

Name: NF3371_low_3
Description: NF3371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3371_low_3
NF3371_low_3
[»] chr8 (10 HSPs)
chr8 (1-562)||(2022585-2023146)
chr8 (321-434)||(10768505-10768618)
chr8 (316-478)||(2029476-2029638)
chr8 (316-434)||(2050767-2050885)
chr8 (316-434)||(2055176-2055294)
chr8 (316-478)||(2058000-2058162)
chr8 (314-434)||(1948561-1948681)
chr8 (316-507)||(2037599-2037790)
chr8 (316-433)||(2034035-2034152)
chr8 (316-371)||(2046852-2046907)
[»] chr1 (2 HSPs)
chr1 (390-435)||(16425973-16426018)
chr1 (390-435)||(16442251-16442296)


Alignment Details
Target: chr8 (Bit Score: 538; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Original strand, 2022585 - 2023146
Alignment:
Q  1 tgatatcatctggaatttatttgaatatatttacaaaattatccctaaattatgtcccgcgcttgagcgacttgtccacttatcggtaaccgatgagcca 100  Q
    |||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2022585 tgatattatcttgaatttatttgactatatttacaaaattatccctaaattatgtcccgcgcttgagcgacttgtccacttatcggtaacctatgagcca 2022684  T
Q  101 cattcaatcatttcatatctgtgtagtacattttgataatagttgtgattaaagctttaggatattatgtgcacatgcttgcagagatataatgttggaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2022685 cattcaatcatttcatatctgtgtagtacattttgataatagttgtgattaaagctttaggatattatgtgcacatgcttgcagagatataatgttggaa 2022784  T
Q  201 tacacaaaacaagttatgaaactgggaaatctattgtttgagttattatcagaagcacttggacttgatccaaactatttgaatgaaatgagatgcaatg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2022785 tacacaaaacaagttatgaaactgggaaatctattgtttgagttattatcagaagcacttggacttgatccaaactatttgaatgaaatgagatgcaatg 2022884  T
Q  301 aaggacttgcacttgtttgccattactatccttcctgtccagaaccagaattgactttgggaacaaccaagcatacggataacgactttatcaccgtgct 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2022885 aaggacttgcacttgtttgccattactatccttcctgtccagaaccagaattgactttgggaataaccaagcatacggataacgactttatcaccgtgct 2022984  T
Q  401 tctacaagatcatattggcggcctccaagttcttcttgaaaatagttgggttgatgtatcacctgttcctggtgctctagtcatcaacattggtgatctt 500  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2022985 tctacaagatcatattggcggcctccaagttcttcgtgaaaatagttgggttgatgtatcacctgttcctggtgctctagtcatcaacattggtgatctt 2023084  T
Q  501 ctacaggtaactttgcatcttttgcttgtgattttaatgtgcatgattcatgtaacagtctt 562  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2023085 ctacaggtaactttgcatcttttgcttgtgattttaatgtgcatgattcatgtaacagtctt 2023146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 321 - 434
Target Start/End: Original strand, 10768505 - 10768618
Alignment:
Q  321 cattactatccttcctgtccagaaccagaattgactttgggaacaaccaagcatacggataacgactttatcaccgtgcttctacaagatcatattggcg 420  Q
    ||||| |||||| | ||||| ||||||||||||||| ||||||||||||||||| | ||||| || ||  |||| |||||||| ||||| |||||||| |    
T  10768505 cattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaagcattctgataatgatttcctcactgtgcttctccaagaccatattggtg 10768604  T
Q  421 gcctccaagttctt 434  Q
    ||||||||||||||    
T  10768605 gcctccaagttctt 10768618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 316 - 478
Target Start/End: Original strand, 2029476 - 2029638
Alignment:
Q  316 tttgccattactatccttcctgtccagaaccagaattgactttgggaacaaccaagcatacggataacgactttatcaccgtgcttctacaagatcatat 415  Q
    |||||||||| |||||| | ||||| ||||||||||||||| |||||||||| ||||||   || || || ||  |||| |||||||| ||||| |||||    
T  2029476 tttgccattattatcctccttgtcctgaaccagaattgactgtgggaacaacaaagcattgtgacaatgatttcctcacagtgcttctccaagaccatat 2029575  T
Q  416 tggcggcctccaagttcttcttgaaaatagttgggttgatgtatcacctgttcctggtgctct 478  Q
    ||| |||||||||||||||  |||| |||  ||| ||||| || ||||||| ||||| |||||    
T  2029576 tggtggcctccaagttctttatgaagataaatggattgatataacacctgtacctggagctct 2029638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 316 - 434
Target Start/End: Original strand, 2050767 - 2050885
Alignment:
Q  316 tttgccattactatccttcctgtccagaaccagaattgactttgggaacaaccaagcatacggataacgactttatcaccgtgcttctacaagatcatat 415  Q
    |||||||||| |||||| | ||||| ||||||||||||||| | |||||||| |||||| | ||||| || ||  |||| |||||||| ||||| |||||    
T  2050767 tttgccattattatcctccttgtcctgaaccagaattgactgtcggaacaacaaagcattctgataatgatttcctcacagtgcttcttcaagaccatat 2050866  T
Q  416 tggcggcctccaagttctt 434  Q
    ||| |||||||||||||||    
T  2050867 tggtggcctccaagttctt 2050885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 316 - 434
Target Start/End: Original strand, 2055176 - 2055294
Alignment:
Q  316 tttgccattactatccttcctgtccagaaccagaattgactttgggaacaaccaagcatacggataacgactttatcaccgtgcttctacaagatcatat 415  Q
    ||||||||||||| ||| | ||||| ||||||||||||||| | |||||||| |||||| | ||||| || ||  |||| |||||||| ||||| |||||    
T  2055176 tttgccattactaccctccttgtcctgaaccagaattgactgtcggaacaacaaagcattctgataatgatttcctcacagtgcttcttcaagaccatat 2055275  T
Q  416 tggcggcctccaagttctt 434  Q
    ||| |||||||||||||||    
T  2055276 tggtggcctccaagttctt 2055294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 316 - 478
Target Start/End: Original strand, 2058000 - 2058162
Alignment:
Q  316 tttgccattactatccttcctgtccagaaccagaattgactttgggaacaaccaagcatacggataacgactttatcaccgtgcttctacaagatcatat 415  Q
    |||| ||||| |||||||| | ||| ||||||||||||||| ||||||||||||||||| | ||||| || ||  | ||  ||||||||||||| |||||    
T  2058000 tttgtcattattatccttcttatcccgaaccagaattgactgtgggaacaaccaagcattctgataatgatttcctgacaatgcttctacaagaccatat 2058099  T
Q  416 tggcggcctccaagttcttcttgaaaatagttgggttgatgtatcacctgttcctggtgctct 478  Q
    ||| || ||||||||||||  |||| |||  ||| ||||| || ||||||| ||||| |||||    
T  2058100 tggtggtctccaagttctttatgaagataaatggattgatataacacctgtacctggagctct 2058162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 434
Target Start/End: Complemental strand, 1948681 - 1948561
Alignment:
Q  314 tgtttgccattactatccttcctgtccagaaccagaattgactttgggaacaaccaagcatacggataacgactttatcaccgtgcttctacaagatcat 413  Q
    |||||||||||| |||||||| ||||| ||||||||| ||||| |||||||||| |||||| | ||  |    ||| |||| |||||||||||||| |||    
T  1948681 tgtttgccattattatccttcttgtcctgaaccagaactgactatgggaacaactaagcattcagaccatagttttctcacagtgcttctacaagaccat 1948582  T
Q  414 attggcggcctccaagttctt 434  Q
    ||||| || ||||||||||||    
T  1948581 attggtggtctccaagttctt 1948561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 316 - 507
Target Start/End: Original strand, 2037599 - 2037790
Alignment:
Q  316 tttgccattactatccttcctgtccagaaccagaattgactttgggaacaaccaagcatacggataacgactttatcaccgtgcttctacaagatcatat 415  Q
    |||||||||| |||||||| ||||| ||||||||||||||| |||||||| |||||||| | ||  | |  ||| |||| |||||| | ||||| |||||    
T  2037599 tttgccattattatccttcttgtccggaaccagaattgactgtgggaacagccaagcattcagaccatggttttctcacagtgcttatccaagaccatat 2037698  T
Q  416 tggcggcctccaagttcttcttgaaaatagttgggttgatgtatcacctgttcctggtgctctagtcatcaacattggtgatcttctacagg 507  Q
    ||| || ||||||||||||  |||| |||  ||| ||||| || |||||||  |||| |||||  |  | || |||||||||||||| ||||    
T  2037699 tggtggtctccaagttctttatgaagataaatggattgatataacacctgtatctggagctctcatagttaatattggtgatcttctgcagg 2037790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 433
Target Start/End: Original strand, 2034035 - 2034152
Alignment:
Q  316 tttgccattactatccttcctgtccagaaccagaattgactttgggaacaaccaagcatacggataacgactttatcaccgtgcttctacaagatcatat 415  Q
    ||||||||||||| ||| | ||||| ||||||||||||||| | |||||||| |||||| | ||||| || ||  |||| |||||||||||||| ||| |    
T  2034035 tttgccattactaccctccttgtcctgaaccagaattgactgtaggaacaacaaagcattctgataatgatttcctcacagtgcttctacaagaccatgt 2034134  T
Q  416 tggcggcctccaagttct 433  Q
    ||| || || ||||||||    
T  2034135 tggtggtcttcaagttct 2034152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 316 - 371
Target Start/End: Original strand, 2046852 - 2046907
Alignment:
Q  316 tttgccattactatccttcctgtccagaaccagaattgactttgggaacaaccaag 371  Q
    |||||||||| |||||| | ||||| ||||||||||||||| ||||||||||||||    
T  2046852 tttgccattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaag 2046907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 390 - 435
Target Start/End: Complemental strand, 16426018 - 16425973
Alignment:
Q  390 atcaccgtgcttctacaagatcatattggcggcctccaagttcttc 435  Q
    ||||| |||||||||||||||||||| || ||||||||||||||||    
T  16426018 atcacagtgcttctacaagatcatataggtggcctccaagttcttc 16425973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 390 - 435
Target Start/End: Complemental strand, 16442296 - 16442251
Alignment:
Q  390 atcaccgtgcttctacaagatcatattggcggcctccaagttcttc 435  Q
    ||||| |||||||||||||||||||| || ||||||||||||||||    
T  16442296 atcacagtgcttctacaagatcatataggtggcctccaagttcttc 16442251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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