View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3371_low_4 (Length: 519)

Name: NF3371_low_4
Description: NF3371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3371_low_4
NF3371_low_4
[»] chr7 (9 HSPs)
chr7 (87-501)||(4302804-4303219)
chr7 (87-209)||(11001101-11001223)
chr7 (99-184)||(1369529-1369614)
chr7 (87-187)||(8915448-8915547)
chr7 (87-207)||(1217487-1217605)
chr7 (90-153)||(1786420-1786483)
chr7 (87-209)||(13883010-13883133)
chr7 (90-187)||(11228432-11228528)
chr7 (93-206)||(27142353-27142462)
[»] chr2 (12 HSPs)
chr2 (87-501)||(35681602-35682016)
chr2 (87-302)||(31635882-31636097)
chr2 (294-501)||(31635491-31635698)
chr2 (92-183)||(280294-280385)
chr2 (87-156)||(27952652-27952721)
chr2 (87-209)||(33053109-33053230)
chr2 (89-149)||(2165624-2165684)
chr2 (88-209)||(32162243-32162363)
chr2 (87-186)||(22011095-22011194)
chr2 (88-145)||(23457389-23457446)
chr2 (111-187)||(18945663-18945739)
chr2 (87-187)||(36648585-36648685)
[»] chr8 (7 HSPs)
chr8 (142-470)||(37192733-37193063)
chr8 (87-184)||(23573249-23573346)
chr8 (87-215)||(2688855-2688981)
chr8 (87-149)||(22922177-22922239)
chr8 (89-160)||(22512377-22512448)
chr8 (87-145)||(26377776-26377834)
chr8 (93-187)||(24577811-24577905)
[»] chr1 (8 HSPs)
chr1 (90-187)||(10926906-10927003)
chr1 (95-209)||(13441924-13442036)
chr1 (87-209)||(23988913-23989035)
chr1 (90-155)||(8966030-8966095)
chr1 (87-187)||(10927814-10927914)
chr1 (90-185)||(40805571-40805666)
chr1 (102-187)||(31915247-31915332)
chr1 (87-155)||(31522576-31522644)
[»] chr6 (14 HSPs)
chr6 (87-208)||(18203126-18203246)
chr6 (87-210)||(22873499-22873622)
chr6 (87-187)||(34374062-34374162)
chr6 (87-187)||(22888965-22889065)
chr6 (87-207)||(12881715-12881834)
chr6 (87-187)||(22910508-22910608)
chr6 (87-149)||(3541947-3542009)
chr6 (87-149)||(30049617-30049679)
chr6 (87-149)||(30051904-30051966)
chr6 (87-187)||(12778684-12778782)
chr6 (98-148)||(18720019-18720069)
chr6 (87-147)||(32361109-32361169)
chr6 (95-150)||(8047663-8047718)
chr6 (89-117)||(11194398-11194426)
[»] chr5 (3 HSPs)
chr5 (95-209)||(21845225-21845335)
chr5 (87-208)||(18252109-18252230)
chr5 (94-149)||(19677629-19677684)
[»] chr4 (7 HSPs)
chr4 (95-187)||(22716324-22716416)
chr4 (95-187)||(22988801-22988893)
chr4 (87-183)||(6659656-6659751)
chr4 (87-187)||(10494634-10494734)
chr4 (89-187)||(7635000-7635098)
chr4 (87-149)||(13085421-13085483)
chr4 (95-165)||(9260297-9260367)
[»] scaffold0054 (3 HSPs)
scaffold0054 (89-209)||(49002-49122)
scaffold0054 (87-187)||(10361-10461)
scaffold0054 (89-209)||(37404-37523)
[»] chr3 (5 HSPs)
chr3 (88-209)||(365879-365999)
chr3 (87-209)||(8536658-8536780)
chr3 (87-137)||(3064066-3064116)
chr3 (103-185)||(2473000-2473084)
chr3 (90-135)||(24516698-24516743)
[»] scaffold0110 (1 HSPs)
scaffold0110 (87-149)||(45943-46005)
[»] scaffold0024 (2 HSPs)
scaffold0024 (87-187)||(145444-145544)
scaffold0024 (87-187)||(144179-144282)


Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 87 - 501
Target Start/End: Complemental strand, 4303219 - 4302804
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4303219 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 4303120  T
Q  187 gcacacccacccggatcccattggttgaactgtgaaggtccgtttttatggacagagctgtcactgtgcaatgtaccaacaatagcagaatcacttgata 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4303119 gcacacccacccggatcccattggttgaactgtgaaggtccgtttttatggacagagctgtcactgtgcaatgtaccaacaatagcagaatcacttgata 4303020  T
Q  287 attctatataagttagagcactgttaagtgatgcctaatcattttgtacttgaagtataagaatgaatgaaaccaacacagttgacgaatccccttttat 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4303019 attctatataagttagagcactgttaagtgatgcctaatcattttgtacttgaagtataagaatgaatgaaaccaacacagttgacgaatccccttttat 4302920  T
Q  387 ttgagagaataaccaatatcctttttcatgaaatccaagtaaa-gtttaataacatgcagaacaccaaatggtgagagtaccctttgtataatgtttctt 485  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4302919 ttgagagaataaccaatatcctttttcatgaaatccaagtaaaggtttaataacatgcagaacaccaaatggtgagagtacccttagtataatgtttctt 4302820  T
Q  486 ggttccactttatata 501  Q
    ||||||||||||||||    
T  4302819 ggttccactttatata 4302804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 11001101 - 11001223
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 186  Q
    ||||||||||||||||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||||||||||  |||||||||||||| ||||    
T  11001101 ccctcctacatcagtctcctccacctctgaagaactcgaccccaaattctcattgtgataaagagcttcccatgcatgttaactcctccaatgaaaaaga 11001200  T
Q  187 gcacacccacccggatcccattg 209  Q
    |  || || || |||||||||||    
T  11001201 gatcatcctcctggatcccattg 11001223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 1369614 - 1369529
Alignment:
Q  99 agtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaa 184  Q
    ||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  1369614 agtctcctccacctctgaagaactcgagcccgagttcttattctgataaagagcttcccatgaatgttgactcctccaatgaacaa 1369529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 8915448 - 8915547
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 186  Q
    ||||||||||||||||||||||| |||||||||||| || ||||| |||||||| | ||||| ||| |||||||||||| ||||||||| ||||||||||    
T  8915448 ccctcctacatcagtctcctccatctctgaagaactagaccccgaattctcattctaataaaaagc-tcccatgcatgttgactcctccgatgaacaaga 8915546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 87 - 207
Target Start/End: Original strand, 1217487 - 1217605
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 186  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||||||| | ||||||||||||| ||  |||||||||||  ||||||||| |||||||    
T  1217487 ccctcctgcatcagtctcctccacctttgaagaactcga-cccgagttcacgttttgataaagagatt-tcatgcatgtcgtgtcctccaattaacaaga 1217584  T
Q  187 gcacacccacccggatcccat 207  Q
    |  ||||| || |||||||||    
T  1217585 gaccaccctcctggatcccat 1217605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 90 - 153
Target Start/End: Complemental strand, 1786483 - 1786420
Alignment:
Q  90 tcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagct 153  Q
    |||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  1786483 tcctacatgagtctcctccacctctgaagaactcgacctcgagttctcattttgataaagagct 1786420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 13883010 - 13883133
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgc--atgtcgactcctccaatgaacaa 184  Q
    ||||||| |||||||||| ||||||||| |||||||||| |||||||||||||| | |||||||| ||| |||||  |||| | |||||||||| |||||    
T  13883010 ccctcctgcatcagtctcgtccacctctaaagaactcga-cccgagttctcattctaataaagagattctcatgcatatgttggctcctccaataaacaa 13883108  T
Q  185 gagcacacccacccggatcccattg 209  Q
    |||  ||||| || |||||||||||    
T  13883109 gagaccaccctcctggatcccattg 13883133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 187
Target Start/End: Complemental strand, 11228528 - 11228432
Alignment:
Q  90 tcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 187  Q
    |||||||||||||| |||| ||||| ||||||| |  |||||||||||||| | ||||||| |||||||||||||  |||||||  ||||||||||||    
T  11228528 tcctacatcagtcttctcc-cctcttaagaacttgcccccgagttctcattctaataaagaacttcccatgcatgatgactcctataatgaacaagag 11228432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 206
Target Start/End: Complemental strand, 27142462 - 27142353
Alignment:
Q  93 tacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaa-gagcttcccatgcatgtcgactcctccaatgaacaagagcaca 191  Q
    ||||||||||||||| ||    |||||| |||| ||| |||||| ||| ||||||| |||||||| |||||||| | ||| |||||||||||  || |||    
T  27142462 tacatcagtctcctctac----gaagaaatcgaccccaagttcttattatgataaaagagcttcc-atgcatgttggctcttccaatgaacagaagaaca 27142368  T
Q  192 cccacccggatccca 206  Q
    |||||||| ||||||    
T  27142367 cccacccgaatccca 27142353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 87 - 501
Target Start/End: Complemental strand, 35682016 - 35681602
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 186  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| ||||||| || ||||||||||||| | |||||||| ||||||| ||||||||||||    
T  35682016 ccctcctgcatcagtctcctccacctctgaagaactcgaccccaagttctctttctgataaagagctttctatgcatgttgactccttcaatgaacaaga 35681917  T
Q  187 gcacacccacccggatcccattggttgaactgtgaaggtccgtttttatggacagagctgtcactgtgcaatgtaccaacaatagcagaatcacttgata 286  Q
    |     ||||| |||||||||||||||||  ||||  |||| |||||||||||| ||| | ||||| |||| ||||||||||||||||| ||||||||||    
T  35681916 g----accacctggatcccattggttgaatcgtgagcgtccctttttatggacaaagcagccactgagcaaggtaccaacaatagcagactcacttgata 35681821  T
Q  287 attctatataagttagagcactgttaagtgatgcctaatcattttgtacttgaagtataagaatgaatgaaaccaacacagttgacgaatccccttttat 386  Q
    ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||  ||||||||| ||||||    
T  35681820 attctgtataagttagagtactgttaagtgatgcctgatcattttgtacttgaagtgtaagaatgaatgaaaccaacacagtaaacgaatccctttttat 35681721  T
Q  387 ttgagagaataaccaatatcctttttcatgaaatccaagtaaa-gtttaataacat---gcagaacaccaaatggtgagagtaccctttgtataatgttt 482  Q
    || |||||||||||||||||| ||||||||||||||||||||| ||||||||||||   ||||||||||||||||||||||||||||| || ||| ||||    
T  35681720 ttaagagaataaccaatatcccttttcatgaaatccaagtaaaggtttaataacatgcagcagaacaccaaatggtgagagtacccttagtctaacgttt 35681621  T
Q  483 cttggttccactttatata 501  Q
    |||||| ||||||||||||    
T  35681620 cttggtcccactttatata 35681602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 87 - 302
Target Start/End: Complemental strand, 31636097 - 31635882
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 186  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||    
T  31636097 ccctcctacatcagtctcctccacctctgaagaactcgaatccgagttctcatttagataaagagtttcccatgcatgttgactcctccaatgaacaaga 31635998  T
Q  187 gcacacccacccggatcccattggttgaactgtgaaggtccgtttttatggacagagctgtcactgtgcaatgtaccaacaatagcagaatcacttgata 286  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||    
T  31635997 gcacacccacccggatcccattggttgaactctgaaggtccgtttttatggacagagcagccactgtgcaatgtaccaacaatagcagactcacttgata 31635898  T
Q  287 attctatataagttag 302  Q
    ||||||||||||||||    
T  31635897 attctatataagttag 31635882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 294 - 501
Target Start/End: Complemental strand, 31635698 - 31635491
Alignment:
Q  294 ataagttagagcactgttaagtgatgcctaatcattttgtacttgaagtataagaatgaatgaaaccaacacagttgacgaatccccttttatttgagag 393  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||    
T  31635698 ataagttagagcaccgttaagtgatgcctgatcattttgtacttgaagtataagaataaatgaaaccaacaca-tagacgaatccccttttatttgagag 31635600  T
Q  394 aataaccaatatcctttttcatgaaatccaagtaaag-tttaataacatgcagaacaccaaatggtgagagtaccctttgtataatgtttcttggttcca 492  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31635599 aataaccaatatcctttttcatgaaatccaagtaaaggtttaataacatgcagaacaccaaatggtgagagtacccttggtataatgtttcttggttcca 31635500  T
Q  493 ctttatata 501  Q
    |||||||||    
T  31635499 ctttatata 31635491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 92 - 183
Target Start/End: Original strand, 280294 - 280385
Alignment:
Q  92 ctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaaca 183  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| || ||||||||||||||    
T  280294 ctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagcttcacatgcatgttgaatcctccaatgaaca 280385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 27952652 - 27952721
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcc 156  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  27952652 ccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagcttcc 27952721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 87 - 209
Target Start/End: Complemental strand, 33053230 - 33053109
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 186  Q
    |||| |||||||||||||||||||||||||||||||||| |||| ||||| ||| | |||||||||||| ||| |||||||||||||| ||| |||||||    
T  33053230 cccttctacatcagtctcctccacctctgaagaactcgaccccg-gttcttattctaataaagagcttctcattcatgtcgactcctctaataaacaaga 33053132  T
Q  187 gcacacccacccggatcccattg 209  Q
    |  ||||| || | |||||||||    
T  33053131 gaccaccctcctgaatcccattg 33053109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 2165684 - 2165624
Alignment:
Q  89 ctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 149  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  2165684 ctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 2165624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 209
Target Start/End: Original strand, 32162243 - 32162363
Alignment:
Q  88 cctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 187  Q
    |||| ||||| ||||||||||| ||||||| ||||| | |  ||||||||||| |||||||||||||||||||||||| |||| ||| ||||||||||||    
T  32162243 cctcttacattagtctcctccatctctgaaaaactcaaccttgagttctcattctgataaagagcttcccatgcatgttgact-ctctaatgaacaagag 32162341  T
Q  188 cacacccacccggatcccattg 209  Q
      ||||| ||  ||||||||||    
T  32162342 accaccctccttgatcccattg 32162363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 22011194 - 22011095
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 186  Q
    ||||||| ||||| |||||||||||||| |||||||||| || ||||||||||| | |||||||  ||| |||| |||| ||||||| | ||||||||||    
T  22011194 ccctcctgcatcactctcctccacctctaaagaactcgaccctgagttctcattctaataaagaatttctcatgtatgttgactccttcgatgaacaaga 22011095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 23457446 - 23457389
Alignment:
Q  88 cctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgat 145  Q
    ||||||||||||||| ||||||||||||||||||||   |||||||||||||| ||||    
T  23457446 cctcctacatcagtcgcctccacctctgaagaactctgacccgagttctcattctgat 23457389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 18945739 - 18945663
Alignment:
Q  111 ctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 187  Q
    ||||||| ||||||||||||| |||||||| |||| ||||| ||| ||| |||||  |||||| |||||||||||||    
T  18945739 ctctgaaaaactcgatcccgaattctcattctgattaagagtttctcattcatgttaactcctgcaatgaacaagag 18945663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 36648685 - 36648585
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgat-aaagagcttcccatgcatgtcgactcctccaatgaacaag 185  Q
    ||||||||||| ||||||||||| || ||||||||||||  || ||||||  || |||| |||| |||| |||||||||  ||||| ||||||||| |||    
T  36648685 ccctcctacatgagtctcctccatctatgaagaactcgactcccagttcttgttctgataaaagtgctt-ccatgcatgatgactcttccaatgaataag 36648587  T
Q  186 ag 187  Q
    ||    
T  36648586 ag 36648585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 142 - 470
Target Start/End: Complemental strand, 37193063 - 37192733
Alignment:
Q  142 tgataaagagcttcccatgcatgtcgactcctccaatgaa-caagagcacacccacccggatcccattggttgaactgtgaaggtccgtttttatggaca 240  Q
    |||| |||||||  |||||||||| |||||||||||  || |||||| ||| || || |||||||||||  |||||||||| ||||| ||||||||||||    
T  37193063 tgatgaagagctctccatgcatgttgactcctccaaaaaaacaagagaacatcctcctggatcccattgagtgaactgtgagggtccctttttatggaca 37192964  T
Q  241 gagctgtcactgtgcaatgtaccaacaatagcagaatcacttgataattctatataagttagagcactgttaagtgatgcctaatcattttgtacttgaa 340  Q
     ||| | ||||| |||||||||||||||| |||||  ||||||||||||||||| ||| ||||||| ||||||||||||||| | ||| |||||||||||    
T  37192963 aagcagccactgagcaatgtaccaacaattgcagacgcacttgataattctatacaagctagagcattgttaagtgatgcctgaccatgttgtacttgaa 37192864  T
Q  341 gtataagaatgaatgaaaccaacacagttgacgaatccccttttatttgagagaataaccaatatcctttttcatgaaatccaagtaaa-gtttaataac 439  Q
    ||||| ||||||||||||||||||||||    | ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  37192863 gtataggaatgaatgaaaccaacacagtaagtggatccctttttatttgagagaataaccaatatcctttttcatgaagtccaagtaaaggtttaataac 37192764  T
Q  440 atgcagaacaccaaatggtgagagtaccctt 470  Q
    |||||||||| ||||||||||||||||||||    
T  37192763 atgcagaacatcaaatggtgagagtaccctt 37192733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 23573346 - 23573249
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaa 184  Q
    |||| |||||| ||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23573346 cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagcttcccatgcatgttgactcctccaatgaacaa 23573249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 87 - 215
Target Start/End: Complemental strand, 2688981 - 2688855
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 186  Q
    ||||||||||| |||||||||||||| |||||||||||||| |||||||||||| | ||  |||| ||||||||||||| ||||||||||||||||| ||    
T  2688981 ccctcctacatgagtctcctccacctatgaagaactcgatcacgagttctcattctaat--agagtttcccatgcatgttgactcctccaatgaacatga 2688884  T
Q  187 gcacacccacccggatcccattggttgaa 215  Q
    |  ||||| |  |||||||||||| ||||    
T  2688883 gatcaccctcatggatcccattgggtgaa 2688855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 22922177 - 22922239
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 149  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||    
T  22922177 ccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttcataaag 22922239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 22512377 - 22512448
Alignment:
Q  89 ctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatg 160  Q
    ||||| |||||||||||||||||||| |||||||||| |||||||||| ||| ||||||  |||||||||||    
T  22512377 ctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattctgataagaagcttcccatg 22512448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 26377834 - 26377776
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgat 145  Q
    |||||||||||||||||||||||||| |||||||||||| ||| |||||||||| ||||    
T  26377834 ccctcctacatcagtctcctccacctttgaagaactcgaccccaagttctcattctgat 26377776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 24577811 - 24577905
Alignment:
Q  93 tacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 187  Q
    |||||||||||||||||| ||||||||| |||| |  |||||||| || ||||| ||| |||| | ||||| |  ||||||||||| ||||||||    
T  24577811 tacatcagtctcctccacttctgaagaattcgaccttgagttctccttctgatacagaacttcgcttgcatatttactcctccaataaacaagag 24577905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 90 - 187
Target Start/End: Complemental strand, 10927003 - 10926906
Alignment:
Q  90 tcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 187  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||| |||||    
T  10927003 tcctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagaacttcccatgcatgttgactcctccaatgaataagag 10926906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 95 - 209
Target Start/End: Original strand, 13441924 - 13442036
Alignment:
Q  95 catcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagagcacaccc 194  Q
    |||||||||||||||||||||||||| ||||||   |||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||  || ||    
T  13441924 catcagtctcctccacctctgaagaattcgatca--agttctcattctgataaagagcttcccatgcatgttgactcctccaatgagcaagagatcatcc 13442021  T
Q  195 acccggatcccattg 209  Q
     || |||||||||||    
T  13442022 tcctggatcccattg 13442036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 87 - 209
Target Start/End: Complemental strand, 23989035 - 23988913
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 186  Q
    ||||||||||| |||||||| |||||||||||||||||| |  |||||||| ||||| ||||||||||||| |||||||  |||||| |||||| |||||    
T  23989035 ccctcctacattagtctcctacacctctgaagaactcgaccttgagttctcgttttggtaaagagcttcccttgcatgttaactccttcaatgagcaaga 23988936  T
Q  187 gcacacccacccggatcccattg 209  Q
    |  |||||  | |||||||||||    
T  23988935 gatcacccttctggatcccattg 23988913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 90 - 155
Target Start/End: Original strand, 8966030 - 8966095
Alignment:
Q  90 tcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttc 155  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||    
T  8966030 tcctacatcagtctcctccacctctgaagaactcgaccctgagttctcattctgataaagagcttc 8966095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 10927914 - 10927814
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 186  Q
    |||||||||| ||||||||||||| |||||||||||||| |||||||||||||| | |||||||| ||| |||||| || ||||| | |||| |||||||    
T  10927914 ccctcctacaacagtctcctccacttctgaagaactcgaccccgagttctcattctaataaagagtttctcatgcaagttgactcttacaataaacaaga 10927815  T
Q  187 g 187  Q
    |    
T  10927814 g 10927814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 90 - 185
Target Start/End: Complemental strand, 40805666 - 40805571
Alignment:
Q  90 tcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaag 185  Q
    ||||||||||||||||||||||| | ||||| |||| ||||||||||  || |||||| ||| ||| ||||||||  ||||||||| |||||||||    
T  40805666 tcctacatcagtctcctccacctttaaagaagtcgaccccgagttcttgttctgataaggagtttcacatgcatgatgactcctccgatgaacaag 40805571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 31915332 - 31915247
Alignment:
Q  102 ctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgca-tgtcgactcctccaatgaacaagag 187  Q
    |||||||||||||||||||||| | ||||||||||| || | || ||||| || |||| || ||| |||||||||||||||||||||    
T  31915332 ctcctccacctctgaagaactcaaccccgagttctcgttctaat-aagagttttccattcattgttgactcctccaatgaacaagag 31915247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 31522644 - 31522576
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttc 155  Q
    |||||||||||||| | | ||||||||||||||||||||   ||||||||| || |||||| |||||||    
T  31522644 ccctcctacatcagccccttccacctctgaagaactcgacttcgagttctcgttctgataatgagcttc 31522576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 18203246 - 18203126
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 186  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || |||||||||| |||||||| |||||||||||    
T  18203246 ccctcctacatcagtctcctccacctctgaagaactcga-cccgagttctcattttaataaagagttttccatgcatgttgactcctcgaatgaacaaga 18203148  T
Q  187 gcacacccacccggatcccatt 208  Q
    |  ||||| ||  |||||||||    
T  18203147 gaccaccctcctagatcccatt 18203126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 87 - 210
Target Start/End: Complemental strand, 22873622 - 22873499
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 186  Q
    |||||||||||||||||| ||||||||| | ||| |||||||| |||||||||| |||||||||||||||||||||| | ||||||||||||||||||||    
T  22873622 ccctcctacatcagtctcatccacctctaaggaaatcgatcccaagttctcattatgataaagagcttcccatgcatattgactcctccaatgaacaaga 22873523  T
Q  187 gcacacccacccggatcccattgg 210  Q
    |   |||| || ||||||||||||    
T  22873522 gacaaccctcctggatcccattgg 22873499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 34374062 - 34374162
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 186  Q
    ||||| ||||| |||||||||||| |||||||||||| | ||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||    
T  34374062 ccctcttacattagtctcctccacatctgaagaactccaccccgagttctcattttgataaagagattcccatgcatgttgactcttccaatgaacaaga 34374161  T
Q  187 g 187  Q
    |    
T  34374162 g 34374162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 22889065 - 22888965
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 186  Q
    |||||||||||||||||| ||||||||| | ||| | || ||| |||||||||| |||||||||||||||||||||| | ||||||||||||||||||||    
T  22889065 ccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgcatattgactcctccaatgaacaaga 22888966  T
Q  187 g 187  Q
    |    
T  22888965 g 22888965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 87 - 207
Target Start/End: Complemental strand, 12881834 - 12881715
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 186  Q
    ||||||||||||||||||||||||||  ||||||||||| |||||| |||||||  ||| |||| |||||||||||||| |||| || ||||||||||||    
T  12881834 ccctcctacatcagtctcctccacctaagaagaactcgaccccgagctctcattccgat-aagaacttcccatgcatgttgacttcttcaatgaacaaga 12881736  T
Q  187 gcacacccacccggatcccat 207  Q
    |  ||||| || |||||||||    
T  12881735 gaccaccctcctggatcccat 12881715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 22910608 - 22910508
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 186  Q
    |||||||||||||||||| ||||||||| | ||| | || ||| |||||||||| ||||||||||||||||||| || | ||||||||||||||||||||    
T  22910608 ccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgtatattgactcctccaatgaacaaga 22910509  T
Q  187 g 187  Q
    |    
T  22910508 g 22910508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 3542009 - 3541947
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 149  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  3542009 ccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 3541947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 30049679 - 30049617
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 149  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  30049679 ccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 30049617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 30051966 - 30051904
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 149  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  30051966 ccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 30051904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 12778684 - 12778782
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 186  Q
    ||||| |||||||||||||||||||||||||||||| || ||| | |||||||| ||||  |||| ||||  ||||||| ||||||||||||||||||||    
T  12778684 ccctcttacatcagtctcctccacctctgaagaacttgaccccaaattctcattctgat--agagtttcctttgcatgttgactcctccaatgaacaaga 12778781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 18720069 - 18720019
Alignment:
Q  98 cagtctcctccacctctgaagaactcgatcccgagttctcattttgataaa 148  Q
    ||||||||||||||| |||||||||||| ||||| |||| |||||||||||    
T  18720069 cagtctcctccacctttgaagaactcgaccccgaattctaattttgataaa 18720019  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 32361169 - 32361109
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataa 147  Q
    ||||||||||| ||||| |||||||||| || ||||||| | |||||||||||| ||||||    
T  32361169 ccctcctacattagtcttctccacctctaaaaaactcgacctcgagttctcattatgataa 32361109  T

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Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 8047663 - 8047718
Alignment:
Q  95 catcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaaga 150  Q
    |||| ||||||||||||||||||||||| || |||||||||| ||| | |||||||    
T  8047663 catcggtctcctccacctctgaagaacttgaccccgagttctaattctaataaaga 8047718  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 11194426 - 11194398
Alignment:
Q  89 ctcctacatcagtctcctccacctctgaa 117  Q
    |||||||||||||||||||||||||||||    
T  11194426 ctcctacatcagtctcctccacctctgaa 11194398  T

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Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 95 - 209
Target Start/End: Original strand, 21845225 - 21845335
Alignment:
Q  95 catcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagagcacaccc 194  Q
    |||||||||  |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    | ||    
T  21845225 catcagtctgttccacctctgaagaactcgaccccgagttctcattctgataaagagcttcccatgcatgttgactcctccaatgaacaaga----aacc 21845320  T
Q  195 acccggatcccattg 209  Q
    |||||||||||||||    
T  21845321 acccggatcccattg 21845335  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 18252230 - 18252109
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 186  Q
    ||||||| |||||| |||||| |||||||||||||| || |||||||||||||| ||||||| ||||| |||||||||| ||||||||||||| ||||||    
T  18252230 ccctcctgcatcagcctcctctacctctgaagaacttgaccccgagttctcattatgataaacagctttccatgcatgtggactcctccaatggacaaga 18252131  T
Q  187 gcacacccacccggatcccatt 208  Q
    |  ||||| || | ||||||||    
T  18252130 gaccaccctcctgaatcccatt 18252109  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 19677629 - 19677684
Alignment:
Q  94 acatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 149  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| || ||||||    
T  19677629 acatcagtctcctccacctctgaagaactcgaccccgagttctcatctttataaag 19677684  T

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Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 95 - 187
Target Start/End: Complemental strand, 22716416 - 22716324
Alignment:
Q  95 catcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 187  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  22716416 catcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgttgactcctccaatgaacaagag 22716324  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 95 - 187
Target Start/End: Original strand, 22988801 - 22988893
Alignment:
Q  95 catcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 187  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  22988801 catcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgttgactcctccaatgaacaagag 22988893  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 6659656 - 6659751
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaaca 183  Q
    ||||||||||||||||||||| ||||||||||||||||| ||| | ||||||| |||||||||||||||||||| || | ||||||||||| |||||    
T  6659656 ccctcctacatcagtctcctctacctctgaagaactcga-cccaaattctcatcttgataaagagcttcccatgaatattgactcctccaaagaaca 6659751  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 10494734 - 10494634
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 186  Q
    ||||| ||||||||||| ||| || |||||||||||||| | | |||||| ||  ||||||| |||||||||||||||||||||||||||||||||||||    
T  10494734 ccctcatacatcagtcttctctacttctgaagaactcgacctcaagttctgatcctgataaatagcttcccatgcatgtcgactcctccaatgaacaaga 10494635  T
Q  187 g 187  Q
    |    
T  10494634 g 10494634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 89 - 187
Target Start/End: Complemental strand, 7635098 - 7635000
Alignment:
Q  89 ctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 187  Q
    |||| |||||||||||||||| ||||||||||||||| ||| | |||||||| | ||||| |||| ||||||||||| ||||||||| |||||||||||    
T  7635098 ctcccacatcagtctcctccatctctgaagaactcgaccccaaattctcattctaataaaaagctccccatgcatgttgactcctccgatgaacaagag 7635000  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 13085421 - 13085483
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 149  Q
    |||||||||||||||||| |||| ||||||||||||||| ||||||||||||| |||||||||    
T  13085421 ccctcctacatcagtctcttccatctctgaagaactcgaccccgagttctcatcttgataaag 13085483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 9260367 - 9260297
Alignment:
Q  95 catcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgt 165  Q
    ||||| ||||||| || ||| |||||||||| |||||||||| ||||||||||||| |||| |||| ||||    
T  9260367 catcaatctcctctacgtctaaagaactcgaccccgagttcttattttgataaagaacttctcatggatgt 9260297  T

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Target: scaffold0054 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 49122 - 49002
Alignment:
Q  89 ctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgat-aaagagcttcccatgcatgtcgactcctccaatgaacaagag 187  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||| ||| |||| ||||| ||| |||||||||| ||||| ||| ||||||| |||    
T  49122 ctcctacatcagtctcctccacctctgaagaactcaaccccgagttcttattctgataaaagaactt-ccatgcatgttgactcttcctatgaacacgag 49024  T
Q  188 cacacccacccggatcccattg 209  Q
     |||||||||||||||||||||    
T  49023 aacacccacccggatcccattg 49002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 10461 - 10361
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 186  Q
    |||||||||||||||||| ||||||||| | ||| | || ||| |||||||||| ||||||||||||||||||| || | ||||||||||||||||||||    
T  10461 ccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgaatattgactcctccaatgaacaaga 10362  T
Q  187 g 187  Q
    |    
T  10361 g 10361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 37523 - 37404
Alignment:
Q  89 ctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgat-aaagagcttcccatgcatgtcgactcctccaatgaacaagag 187  Q
    ||||||||||||||||||||||||||||||||||||| ||| | |||| ||| |||| ||||||||| |||||||||| ||||| ||| ||||||  |||    
T  37523 ctcctacatcagtctcctccacctctgaagaactcga-cccaaattcttattctgataaaagagctt-ccatgcatgttgactcttcctatgaaccggag 37426  T
Q  188 cacacccacccggatcccattg 209  Q
     || |||| |||||||||||||    
T  37425 aacgcccaaccggatcccattg 37404  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 88 - 209
Target Start/End: Original strand, 365879 - 365999
Alignment:
Q  88 cctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 187  Q
    |||||| ||||| ||||||||||||||||||||||||| | ||||||||| |||||||||||||||| ||||| |||| ||||| ||||||||||| |||    
T  365879 cctcctgcatcaatctcctccacctctgaagaactcgacctcgagttctcgttttgataaagagctt-ccatgtatgttgactcttccaatgaacaggag 365977  T
Q  188 cacacccacccggatcccattg 209  Q
      ||||| || |||||||||||    
T  365978 accaccctccgggatcccattg 365999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 8536658 - 8536780
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 186  Q
    |||||||||||||| ||| ||||||||| ||||||||||  ||||||||| ||| ||||||| || ||| |||  |||| ||||| ||||||||||||||    
T  8536658 ccctcctacatcagcctcttccacctctaaagaactcgactccgagttcttattctgataaaaagtttctcatatatgttgactcttccaatgaacaaga 8536757  T
Q  187 gcacacccacccggatcccattg 209  Q
    |  ||||| || |||||||||||    
T  8536758 gatcaccctcctggatcccattg 8536780  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 3064066 - 3064116
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctc 137  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  3064066 ccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 3064116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 2473000 - 2473084
Alignment:
Q  103 tcctccacctctgaagaactcgatcccgagttctcattttgat--aaagagcttcccatgcatgtcgactcctccaatgaacaag 185  Q
    |||||||| | | |||||||||| |||||||||||||| ||||  ||| | |||| ||||||||| |||| ||||||||||||||    
T  2473000 tcctccacttttaaagaactcgaccccgagttctcattctgataaaaaaaacttctcatgcatgttgacttctccaatgaacaag 2473084  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 24516698 - 24516743
Alignment:
Q  90 tcctacatcagtctcctccacctctgaagaactcgatcccgagttc 135  Q
    |||||||||| |||||||||| || ||||||||||| |||||||||    
T  24516698 tcctacatcaatctcctccacttcagaagaactcgaccccgagttc 24516743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 45943 - 46005
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 149  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  45943 ccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 46005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 145544 - 145444
Alignment:
Q  87 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgca-tgtcgactcctccaatgaacaag 185  Q
    ||||||||||||||||||||||||||| |||||||| || |||||||| | ||| |||||||||| |  || | || ||| ||||||| |||||||||||    
T  145544 ccctcctacatcagtctcctccacctcagaagaacttga-cccgagttattattctgataaagagttgtccgttcattgttgactccttcaatgaacaag 145446  T
Q  186 ag 187  Q
    ||    
T  145445 ag 145444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 144179 - 144282
Alignment:
Q  87 ccctcctacatcagt---ctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgca-tgtcgactcctccaatgaac 182  Q
    ||||||| |||||||   |||||||| |||||||||||| || |||||||||| ||| |||||||||| |  |||| || ||||||||||| | ||||||    
T  144179 ccctcctgcatcagtctcctcctccatctctgaagaacttga-cccgagttcttattctgataaagagttgtccattcattgtcgactccttcgatgaac 144277  T
Q  183 aagag 187  Q
    |||||    
T  144278 aagag 144282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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