View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3371_low_6 (Length: 459)
Name: NF3371_low_6
Description: NF3371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3371_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 8e-96; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 266 - 447
Target Start/End: Complemental strand, 35047662 - 35047481
Alignment:
| Q |
266 |
gacaaatgatgcaaactatgattcaagtcttcgtcttcttgtgtccaataaaagatcacaattcaaatatttgggcgcaaagaatgaatcaaatcgatca |
365 |
Q |
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| T |
35047662 |
gacaaatgatgcaaactatgattcaagtcttcgtcttcttgtgtccaataaaagatcacaattcaaatatttgggcgcaaagaatgaatcaaatcgatca |
35047563 |
T |
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| Q |
366 |
acaaaaatatctaaattctcaaagccaaccttgtgaaaatcaactctatgctaataatacttatacttttttaatttatgat |
447 |
Q |
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| T |
35047562 |
acaaaaatatctaaattctcaaagacaaccttgtgaaaatcaactctatgctaataatacttatacttttttaatttatgat |
35047481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 35047912 - 35047735
Alignment:
| Q |
17 |
caatttgtgtatctaattcttgtacggccttgttgaggatttcacggttgttgagaagtaaacatagagcccaagttaatgttgatgttgtagtgtctgt |
116 |
Q |
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| T |
35047912 |
caatttgtgtatctaattcttgtacggccttgctgaggatttcacggttgttgagaagtaaacatagagcccaagttaatgttgatgttgtagtgtctgt |
35047813 |
T |
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| Q |
117 |
gccagctagaattaatgactgcaaatattgtgaaaaatgttttatatttttagacttccttgttagtttaattgagag |
194 |
Q |
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| T |
35047812 |
gccagctagaattaatgactgcaaatattgtgaaaaatgttttatatttttagacttccttgttagtttaattgagag |
35047735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 35026327 - 35026203
Alignment:
| Q |
17 |
caatttgtgtatctaattcttgtacggccttgttgaggatttcacggttgttgagaagtaaacatagagcccaagttaatgttgatgttgtagtgtctgt |
116 |
Q |
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| T |
35026327 |
caatttgtgtatctaattcatgaatgactttgtttaggacctcacgattgttaagaagtaaagatagagtccaagtcaatgttcctgctgtagtgtctgt |
35026228 |
T |
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| Q |
117 |
gccagctagaattaatgactgcaaa |
141 |
Q |
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| T |
35026227 |
agctgctagaattagtgcctgcaaa |
35026203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 35032273 - 35032149
Alignment:
| Q |
17 |
caatttgtgtatctaattcttgtacggccttgttgaggatttcacggttgttgagaagtaaacatagagcccaagttaatgttgatgttgtagtgtctgt |
116 |
Q |
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| T |
35032273 |
caatttgtgtatctaattcttgaatggctttgtttagaacttcaggattgttaagaagtaaagatagtgaccatgtcaatgttcctgcggtagtatctgt |
35032174 |
T |
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| Q |
117 |
gccagctagaattaatgactgcaaa |
141 |
Q |
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| T |
35032173 |
agccgctagaattaatgcctgcaaa |
35032149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 35040290 - 35040166
Alignment:
| Q |
17 |
caatttgtgtatctaattcttgtacggccttgttgaggatttcacggttgttgagaagtaaacatagagcccaagttaatgttgatgttgtagtgtctgt |
116 |
Q |
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| T |
35040290 |
caatttgtgtatctaattcttgaatggctttgtttaaaacttcaggattgttaagaagtaaagaaacagaccaggtcaatgtcgctgcggtagtgtctgt |
35040191 |
T |
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| Q |
117 |
gccagctagaattaatgactgcaaa |
141 |
Q |
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|| |||||||||| || ||||||| |
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| T |
35040190 |
acctgctagaattagtgcctgcaaa |
35040166 |
T |
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