View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3371_low_7 (Length: 434)
Name: NF3371_low_7
Description: NF3371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3371_low_7 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 16 - 434
Target Start/End: Original strand, 49510682 - 49511100
Alignment:
| Q |
16 |
cacaaaacacaatggacatttgtgtttctaaaatactctgctgtttcttgatcatgagttgccatcaagccatctttcttaaagtcaggaacagaagttc |
115 |
Q |
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| T |
49510682 |
cacaaaacacaatggacatttgtgtttctaaaatactctgctgtttcttgatcatgagttgccatcaagccatctttcttaaagtcaggaacagaagttc |
49510781 |
T |
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| Q |
116 |
tgtcatcccaaacaagcataagaacattaacaccttcattggctttcttcttaagaagctccccaagagtgatggttgctcttgttgactcgtttggatc |
215 |
Q |
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| T |
49510782 |
tgtcatcccaaacaagcataagaacattaacaccttcattggctttcttcttaagaagctccccaagagtgatggttgctcttgttgactcgtttggatc |
49510881 |
T |
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| Q |
216 |
tctaatcaaggttatttccgtgtaaacagaccaaccagttatgcaaataaaatgcttagcatcattaattgcattgcaagtatcttcccaacattttccc |
315 |
Q |
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| T |
49510882 |
tctaatcaaggttatttccgtgtaaacagaccaaccagttatgcaaataaaatgcttagcatcattaattgcattgcaagtatcttcccaacattttccc |
49510981 |
T |
|
| Q |
316 |
ggcacataccgttctgctccatccaatggaatatacggaacagaaccatctggaaaatgtgcatcttggtaaagagtaatttggcaaccattattttgtt |
415 |
Q |
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| T |
49510982 |
ggcacataccgttctgctccatccaatggaatatacggaacagaaccatctagaaaatgtgcatcttggtaaagagtaatttggcaaccattattttgtt |
49511081 |
T |
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| Q |
416 |
taaagaatgtgcgaggaac |
434 |
Q |
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| T |
49511082 |
taaagaatgtgcgaggaac |
49511100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 49521629 - 49521933
Alignment:
| Q |
19 |
aaaacacaatggacatttgtgtttctaaaatactctgctgtttcttgatcatgagttgccatcaagccatctttcttaaagtcaggaacagaagttctgt |
118 |
Q |
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| T |
49521629 |
aaaacacaatgtacctttgtgttcttaaaatactctgcagtttcttggtcatgtgttcccatcaaaccgtctttcttaaaagccggaacagaggttctgt |
49521728 |
T |
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| Q |
119 |
catcccaaacaagcataagaacattaacaccttcattggctttcttcttaagaagctccccaagagtgatggttgctcttgttgactcgtttggatctct |
218 |
Q |
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| T |
49521729 |
catcccaaacaagcacaagaacattaacaccttcgttggcttttttcttgagcatttctcctagggtgatactactttctgttgtcttgtttgggtccct |
49521828 |
T |
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| Q |
219 |
aatcaaggttatttccgtgtaaacagaccaaccagttatgcaaataaaatgcttagcatcattaattgcattgcaagtatcttcccaacattttcccggc |
318 |
Q |
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| T |
49521829 |
aatcaaggttatttctgtatgaacagaccaaccagttatgtaaataaagactttagcattcataatggcattgtaaatatcttcccaacatcttccaggt |
49521928 |
T |
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| Q |
319 |
acata |
323 |
Q |
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||||| |
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| T |
49521929 |
acata |
49521933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 58 - 189
Target Start/End: Complemental strand, 44662042 - 44661911
Alignment:
| Q |
58 |
gtttcttgatcatgagttgccatcaagccatctttcttaaagtcaggaacagaagttctgtcatcccaaacaagcataagaacattaacaccttcattgg |
157 |
Q |
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||||||||||||||||| |||||||| |||||||| || || |||||| || ||||| ||||||||||||||||| | || |||||||||| | | |
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| T |
44662042 |
gtttcttgatcatgagtagccatcaacccatctttttttaacagaggaaccgacgttctatcatcccaaacaagcattaataccctaacaccttcttgtg |
44661943 |
T |
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| Q |
158 |
ctttcttcttaagaagctccccaagagtgatg |
189 |
Q |
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| T |
44661942 |
cttttttcttgagaagctcaccaagtgtgatg |
44661911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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