View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3371_low_8 (Length: 428)
Name: NF3371_low_8
Description: NF3371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3371_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 5 - 368
Target Start/End: Original strand, 34952798 - 34953160
Alignment:
| Q |
5 |
tatacaaataactcataattgtctacatgatgttgaggaagaccataaggactcatttgtacaagacactaaaatgaatcttttgattatatnnnnnnnn |
104 |
Q |
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| T |
34952798 |
tatacaaataactcataattgtctacatgatgttgaggaagaccataaggactcatttgtacaagacactaaaatgaatcttttgattatataaaaaaa- |
34952896 |
T |
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| Q |
105 |
ttaattttttgaacgatgaaagacgaaaatgaacattgaataacagataaaggatcaaaacggttttttagcctaatttatttattcacaattaagatta |
204 |
Q |
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| T |
34952897 |
ttaattttttgaacgatgaaagacgaaaatgaacattgaataaaagataaaggatcaaaagaattttttagcctaatttatttattcacaattaagatta |
34952996 |
T |
|
| Q |
205 |
ctttattttctcctttaaagtgaattgtttcttttataagaagtaatcctaaannnnnnnggaccataatgtagccgatgtcaaagataacaaagtgttt |
304 |
Q |
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| T |
34952997 |
ctttattttttcctttaaagtgaattgtttcttttataagaagcaatcctaaatttttttggatcataatgtagccgatgtctaagataacaaagtgctt |
34953096 |
T |
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| Q |
305 |
tatatagtttatggtcgaaaattagttgaaattctatcatcaacgggcatcacttctcataagt |
368 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34953097 |
tatatagtttatggtcgaaaattacttgaaattctatcatcaacgggcatcacttctcataagt |
34953160 |
T |
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