View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3371_low_9 (Length: 403)
Name: NF3371_low_9
Description: NF3371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3371_low_9 |
 | |
|
| [»] scaffold0568 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 5 - 387
Target Start/End: Complemental strand, 45628904 - 45628533
Alignment:
| Q |
5 |
taggagatacagaaaaggcaagttagtagtgttagaacacatgaatattttgtgacacttgaatattctagttaacattgttccaaatacagttatggct |
104 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
45628904 |
taggagatacaaaaaaggcaagttagtagtgttagaacacttgaatattttgtgacacttgaatattctagttaacattgttccaaatgcagttatagct |
45628805 |
T |
|
| Q |
105 |
tataacaattttattttaattttgtagagaactttattttatgagcacaattatatggacatgccaaaacaagacaaaaatgaattaccaatggatagaa |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45628804 |
tataacaattttattttaattttgtagagaactttattttatgagcacaattaaatggacatgccaaaacaagacaaaaatgaattaccaatggatagaa |
45628705 |
T |
|
| Q |
205 |
atgtcaattaaataaatatatcttattgtgaatggctttagaatgtaatgatgcaatgaagatccaataaagatggggttatactgaattttggtaaaag |
304 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45628704 |
atgtc----------atttatcttattgtgaatggctttagaatgcaatgatgcaatgaagatccaataaagat-gggttatactgaattttggtaaaag |
45628616 |
T |
|
| Q |
305 |
tttattgttgggacttgaaggcagatcaatcaaactattacatagtgtgggaaatgactataactgaattcttaacagtatgt |
387 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45628615 |
tttattgttgggacttggaggcagatgaatcaaactattacatagtgtgggaaatgactataactgaattcttaacagtatgt |
45628533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 193 - 387
Target Start/End: Complemental strand, 30784868 - 30784677
Alignment:
| Q |
193 |
caatggatagaaatgtcaattaaataaatatatcttattgtgaatggctttagaatgtaatgatgcaatgaagatccaataaagatggggttatactgaa |
292 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
30784868 |
caatggatagaaatgtcatttaaataaatatatcttattgtgaatggctttagaatgtaatgatgcaatgaagatgcaataaagat-gggttatactgaa |
30784770 |
T |
|
| Q |
293 |
ttttggtaaaagtttattgttgggacttgaaggcagatcaatcaaactattacatagtgtgggaaatgactataactgaattcttaacagtatgt |
387 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
30784769 |
ttttggtaaaagtttattgttgggac-tgaatgcagatgaatcaaactattacatagtgtaagaaatgactat-actgaattcttaacagtatgt |
30784677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 69 - 230
Target Start/End: Complemental strand, 29157818 - 29157657
Alignment:
| Q |
69 |
attctagttaacattgttccaaatacagttatggcttataacaattttattttaattttgtagagaactttattttatgagcacaattatatggacatgc |
168 |
Q |
| |
|
||||||| ||||||||||| |||| ||||||| ||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29157818 |
attctagctaacattgttctaaatgcagttataacttataacaattttattttaattctgcagagaactttattttatgaacacaattatatggacatgc |
29157719 |
T |
|
| Q |
169 |
caaaacaagacaaaaatgaattaccaatggatagaaatgtcaattaaataaatatatcttat |
230 |
Q |
| |
|
||| ||||||||| || || |||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
29157718 |
caacacaagacaagaaagagttaccaatggatagaaatgtcatttaaacaaatatatcttat |
29157657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0568
Description:
Target: scaffold0568; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 585 - 691
Alignment:
| Q |
5 |
taggagatacagaaaaggcaagttagtagtgttagaacacatgaatattttgtgacacttgaatattctagttaacattgttccaaatacagttatggct |
104 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| |
|
|
| T |
585 |
taggagatacaaaaaaggcaagttagtagtgttagaacacttaaatattttgtgacacttgaatattcaagttaacattgttccaaatgcagttatagct |
684 |
T |
|
| Q |
105 |
tataaca |
111 |
Q |
| |
|
||||||| |
|
|
| T |
685 |
tataaca |
691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 280 - 387
Target Start/End: Complemental strand, 43903168 - 43903067
Alignment:
| Q |
280 |
gggttatactgaattttggtaaaagtttattgttgggacttgaaggcagatcaatcaaactattacatagtgtgggaaatgactataactgaattcttaa |
379 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43903168 |
gggttatactgaattttagtaaaagtttattgttggga------ggcagatgaatcaaactattacatagtgtgggaaatgactataaccgaattcttaa |
43903075 |
T |
|
| Q |
380 |
cagtatgt |
387 |
Q |
| |
|
|||||||| |
|
|
| T |
43903074 |
cagtatgt |
43903067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 280 - 387
Target Start/End: Complemental strand, 43898815 - 43898716
Alignment:
| Q |
280 |
gggttatactgaattttggtaaaagtttattgttgggacttgaaggcagatcaatcaaactattacatagtgtgggaaatgactataactgaattcttaa |
379 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||| ||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43898815 |
gggttatactgaattttcgaaaaagtttattgttggga------ggcagatgaataaaactattaca--gtgtgggaaatgactataactgaattcttaa |
43898724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University