View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3372_high_1 (Length: 762)
Name: NF3372_high_1
Description: NF3372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3372_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 703; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 11 - 745
Target Start/End: Complemental strand, 49659119 - 49658385
Alignment:
| Q |
11 |
cacagacggctacaaaacccttcctgaagttcgtcgaacgagtagtttctcttgtttgtcaggtgcggccttaagtgcaaatgctacactagccaacaca |
110 |
Q |
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| T |
49659119 |
cacagacggctacaaaacccttcctgaagttcgccgaacaagtagtttctcttgtttgtcaggtgcggccttaagtgcaaatgctacactagccaacaca |
49659020 |
T |
|
| Q |
111 |
aacatttgcaatggtaagttaggaggagaaattctgccaagttgggactctcctaattcgtttcgtagaataccttcttcgccaagtcttccgcggtttg |
210 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49659019 |
aacatttgcaatggtaagttaggaggagaaattcttccaagttgggactctcctaattcgtttcgtagaataccttcttcgccaagtcttccgcggtttg |
49658920 |
T |
|
| Q |
211 |
atagactatcatcttctctcccaagtagtctctcatacctaagttgcagcccttccactccaagtgatattcttgagtacgactcattgaaatccgcaag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49658919 |
atagactatcatcttctctcccaagtagtctctcatacctaagttgcagcccttccactccaagtgatattcttgagtacgactcattgaaatccgcaag |
49658820 |
T |
|
| Q |
311 |
tgaccgttccagtagtgacggttttcttattgccaaggaagttcaagtagcaggaggagctgctggtgaagatagagttcaagcagtttgttctgaagaa |
410 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49658819 |
tgaccgatccagtagtgacggttttcttattgccaaggaagtccaagtagcaggaggagctgctggtgaagatagagttcaagcagtttgttctgaagaa |
49658720 |
T |
|
| Q |
411 |
aatggttggctcttttgtgcaatttatgatggatttaatgggagagatgcagctgactttctggctggtacactttatgacaccatcatatcttacctag |
510 |
Q |
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| T |
49658719 |
aatggttggctcttttgtgcaatttatgatggatttaatgggagagatgcagctgactttctggctggtacactttatgacaccatcatatcttacctag |
49658620 |
T |
|
| Q |
511 |
ataggttaattttggaattggagcctgtttctatcgctgcttccgaccacgctgatttgggtgaattccttcgttataagctgagtgatagtcttaattg |
610 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49658619 |
ataggttaattttggaattagagcctgtttctatcactgcttccgaccacgctgatttgggtgaattccttcgttataagctgagtgatagtcttaattg |
49658520 |
T |
|
| Q |
611 |
tcacgaggatcattcactgtcaagaacatcacgcgggtctttttcgcgcagagtacttgatagtctagaaagtgctctcagtcaggctgagaatgatttc |
710 |
Q |
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| T |
49658519 |
tcaagaggatcattcactgtcaagaacatcacgcgggtctttttcgcgcagagtacttgatagtctagaaagtgctctcagtcaggctgagaatgatttc |
49658420 |
T |
|
| Q |
711 |
ttgtacatggttgaacaggaaatgggggaacgttt |
745 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
49658419 |
ttgtacatggttgaacaggaaatgggggaacgttt |
49658385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 2e-66; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 54 - 475
Target Start/End: Original strand, 14374960 - 14375387
Alignment:
| Q |
54 |
agtttctcttgtttgtcaggtgcggccttaagtgcaaatgctacactagccaacacaaacatttgcaatggtaagttaggaggagaaattctgccaagtt |
153 |
Q |
| |
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||||||||||| ||||| ||||| ||||||||||||||| |||||| |||||||||||||| ||||||||| | |||||| |||||| || |||| | |
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| T |
14374960 |
agtttctcttgcttgtctggtgctgccttaagtgcaaattgtacacttgccaacacaaacatctgcaatggtgtgataggagaagaaatccttccaaact |
14375059 |
T |
|
| Q |
154 |
gggactctcctaattcgtttcgtagaataccttcttcgccaagtcttccgcggtttgatagactatcatcttctctcccaagtagtctctcatacctaag |
253 |
Q |
| |
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|||||||||||||| ||||| | |||| ||||| || |||||| ||| || | |||||||||||||| | |||||| | ||| ||||||| |
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| T |
14375060 |
tagactctcctaattcatttcgacgggtaccctcttcaccgagtcttggaatgttggacatgctatcatcttctcttcatagtagtttgtcaaacctaag |
14375159 |
T |
|
| Q |
254 |
ttgcagcccttccactccaagtgatattcttgagtacgac------tcattgaaatccgcaagtgaccgttccagtagtgacggttttcttattgccaag |
347 |
Q |
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||| ||||| || | ||||||| |||| ||||| | ||| ||||| |||| | |||| | ||| || ||||| |||||||||| ||| | | |
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| T |
14375160 |
ttgtagcccatcaagtccaagtaatatgcttgaacatgacccttgttcattaaaattcatgagtgctccttctagaagtgaaggttttcttagtgctacg |
14375259 |
T |
|
| Q |
348 |
gaagttcaagtagcaggaggagctgctggtgaagatagagttcaagcagtttgttctgaagaaaatggttggctcttttgtgcaatttatgatggattta |
447 |
Q |
| |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||| |
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| T |
14375260 |
gaagtacaagtagcgggaggagctgctggtgaagatagagttcaagcagtttgttctgaagaaaatggttggcttttttgtgcaatttatgacggcttta |
14375359 |
T |
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| Q |
448 |
atgggagagatgcagctgactttctggc |
475 |
Q |
| |
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|||||||||||||||| ||||||||||| |
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| T |
14375360 |
atgggagagatgcagcggactttctggc |
14375387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 690 - 735
Target Start/End: Original strand, 14375569 - 14375614
Alignment:
| Q |
690 |
agtcaggctgagaatgatttcttgtacatggttgaacaggaaatgg |
735 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
14375569 |
agtcaggttgagaatgatttcttgtacatggttgagcaggaaatgg |
14375614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 664 - 741
Target Start/End: Original strand, 8548914 - 8548997
Alignment:
| Q |
664 |
tacttgatagtctagaaagtgctctcagtcagg-------ctgagaatgatttcttgtacatggttgaacaggaaatgggggaac |
741 |
Q |
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| T |
8548914 |
tacttgatagtcttgaaagtgctctcagtcaggatgagaaatgagaatgatttcttgtacatggttg-acaggtaatgggcgaac |
8548997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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