View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3372_high_11 (Length: 301)
Name: NF3372_high_11
Description: NF3372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3372_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 7 - 298
Target Start/End: Complemental strand, 5960650 - 5960359
Alignment:
| Q |
7 |
gtagcataggcattatgaaattattagtattgctctctaatctcaagttggtgtgttgttggagtttatatgtgggtatgaaattaatgattatggttta |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5960650 |
gtagtataggcattatgaaattattagtattgctctctaatctcaagttggtgtgttgttggagtttatatgtgggtatgaatttaatgattatggttta |
5960551 |
T |
|
| Q |
107 |
gaaagtgtcacgatgagggggttaaatagaatgtaaagtgatgactttaacgggtctgggaaagccaaagacttttcgagaggatggacaagtgaacttt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5960550 |
gaaagtgtcacgatgagggggttaaatagaatgtaaagtgatgactttaacgggtctgggaaagccaaagacttttcgagaggatggacaagtgaacttt |
5960451 |
T |
|
| Q |
207 |
ttagagacaaagtgacacttgcaaccggtaatttttatagaaaatacctgaagcaaatcctattctagtaacagagagatatcaccctcata |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5960450 |
ttagagacaaagtgacacttgcaaccggtaatttttatagaaaatacctgaagcaaatcctattctggtaacagagagatatcaccctcata |
5960359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 25478816 - 25478864
Alignment:
| Q |
238 |
tttttatagaaaatacctgaagcaaatcctattctagtaacagagagat |
286 |
Q |
| |
|
|||||||||||||||| |||| ||||||| |||| ||||||||||||| |
|
|
| T |
25478816 |
tttttatagaaaatacttgaaacaaatcccattccggtaacagagagat |
25478864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University