View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3372_high_12 (Length: 298)
Name: NF3372_high_12
Description: NF3372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3372_high_12 |
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| [»] scaffold0038 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 28180043 - 28179746
Alignment:
| Q |
1 |
ttataaaaatctacctgatttcattgaaaacataacaaaattggtttttatccaactaattcagctttatttcatcaattctacaagccaagttatcaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28180043 |
ttataaaaatctacctgatttcattgaaaacataacaaaattggtttttatccaactaattcagctttatt-catcaattctacaagccaagttatcaaa |
28179945 |
T |
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| Q |
101 |
tgttcgctgaatgcctaacatcaaacactctttaaaagcataaaagttactaaaattcaaggctttcaaacatttaaa----------atttcattacct |
190 |
Q |
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| T |
28179944 |
tgttcgctgaatgcctaacatcaaacactctttaaaagcataaaagt---taaaattcaaggctttcaaacatttaaagcttctacatatttcattacct |
28179848 |
T |
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| Q |
191 |
atgaacaatagttacaatgaataaattcctgagaacatcctgtcacataccactatcatgcttcattttgactacaacttttgtaacacattttcatctc |
290 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
28179847 |
atgaacaataattacaatgaataaattcctgagaacatcctgtcacataccactatcatgcttcattttgactacaatttttgtaacacattttcatatc |
28179748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 28156358 - 28156185
Alignment:
| Q |
1 |
ttataaaaatctacctgatttcattgaaaacataacaaaattggtttttatccaactaattcagctttatttcatcaattctacaagccaagttatcaaa |
100 |
Q |
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|||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| || ||| | ||||| |||||||||||| | |||||||| |
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| T |
28156358 |
ttataaaaatctacatgatttcattgaaaacatacgaaagttggtttttatccaactaatgcaacttga-ttcat-tattctacaagcccatttatcaaa |
28156261 |
T |
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| Q |
101 |
tgttcgctgaatgcctaacatcaaacactctttaaaagcataaaagttactaaaattcaaggctttcaaacatttaaa |
178 |
Q |
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| T |
28156260 |
cgtttgctaaatgcctaacatcaaacgctctttaaaagcatacaa--aattaaaatttaaggctttcgaacatttaaa |
28156185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 178
Target Start/End: Complemental strand, 28224616 - 28224513
Alignment:
| Q |
73 |
catcaattctacaagccaagttatcaaatgttcgctgaatgcctaacatcaaacactctttaaaagcataaaagttactaaaattcaaggctttcaaaca |
172 |
Q |
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| T |
28224616 |
catcaattctacaagccaaattatcgaacgtttgctaaatacctaacatcaaacactctttaaaagcatacaa--aattaaaatttaaggctttcaaaca |
28224519 |
T |
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| Q |
173 |
tttaaa |
178 |
Q |
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|||||| |
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| T |
28224518 |
tttaaa |
28224513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 28224668 - 28224619
Alignment:
| Q |
1 |
ttataaaaatctacctgatttcattgaaaacataacaaaattggttttta |
50 |
Q |
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||||| |||||||| ||||| |||||||||||| ||||||||||||||| |
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| T |
28224668 |
ttatagaaatctacaagattttattgaaaacataccaaaattggttttta |
28224619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 178
Target Start/End: Complemental strand, 25114 - 25011
Alignment:
| Q |
73 |
catcaattctacaagccaagttatcaaatgttcgctgaatgcctaacatcaaacactctttaaaagcataaaagttactaaaattcaaggctttcaaaca |
172 |
Q |
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||||||||||||||||||| ||||| || ||| ||| ||| ||||||||||||||||||||||||||||| || | ||||||| |||||||||||||| |
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| T |
25114 |
catcaattctacaagccaaattatcgaacgtttgctaaatacctaacatcaaacactctttaaaagcatacaa--aattaaaatttaaggctttcaaaca |
25017 |
T |
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| Q |
173 |
tttaaa |
178 |
Q |
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|||||| |
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| T |
25016 |
tttaaa |
25011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 25166 - 25117
Alignment:
| Q |
1 |
ttataaaaatctacctgatttcattgaaaacataacaaaattggttttta |
50 |
Q |
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||||| |||||||| ||||| |||||||||||| ||||||||||||||| |
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| T |
25166 |
ttatagaaatctacaagattttattgaaaacataccaaaattggttttta |
25117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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