View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3372_high_23 (Length: 238)
Name: NF3372_high_23
Description: NF3372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3372_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 38107515 - 38107734
Alignment:
| Q |
1 |
ctttctaattgttatggcagtggagaaatcaacgagttcataattcagagttgatgacattaaactaggaggttaggatcacacatgtgtatcgagaagt |
100 |
Q |
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| T |
38107515 |
ctttctaattgttatggcagtggagaaatcaacgagttcataattcatagttgatgacattaaactaggaggttaggatcacacatgtgtatcgagaagt |
38107614 |
T |
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| Q |
101 |
taactggtgtgtggatgttcttgccaacacgagtagtgaaggtgacatgagaattacttatttagaacatcctctccaaggatgtctcaagttttatctg |
200 |
Q |
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| T |
38107615 |
taaccggtgtgcggatgttcttgccaacacgagtagtgaaggtgacatgagaattacttatttagaacatcccctccaaggatgtctcaaattttatctg |
38107714 |
T |
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| Q |
201 |
atgattggaggggtgtgtct |
220 |
Q |
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| T |
38107715 |
atgattggaggggtgtgtct |
38107734 |
T |
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Back To:
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Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 47 - 220
Target Start/End: Original strand, 22007706 - 22007880
Alignment:
| Q |
47 |
agagttgatgacattaaactaggaggttaggatcacacatgtgtatcgagaagttaactggtgtgtggatgttcttgccaacacgagtagtgaaggtgac |
146 |
Q |
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|||||||||| ||||||||| ||||||||||||||| |||||||||||||||| |||| |||||| ||||||||||||||| | |||||||| |||| |
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| T |
22007706 |
agagttgatggcattaaactgggaggttaggatcacgcatgtgtatcgagaagctaacaggtgtgcatatgttcttgccaacatgggtagtgaatgtgag |
22007805 |
T |
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| Q |
147 |
atgagaattacttatttagaacat-cctctccaaggatgtctcaagttttatctgatgattggaggggtgtgtct |
220 |
Q |
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| T |
22007806 |
atgagaattacttatttagaacatcccccaccaaggatgtcccaggttttatctgatgattgtaggggtgtgtct |
22007880 |
T |
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