View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3372_low_10 (Length: 378)
Name: NF3372_low_10
Description: NF3372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3372_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 2787203 - 2787551
Alignment:
| Q |
18 |
cattatagtatattctttatgccttcctaagttgcttaaccaagaatataacttcaccacatgatttgagtgtagtatatatatgtctcactttctcgga |
117 |
Q |
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| T |
2787203 |
cattatagtatattctttatgccttcctaagttgcttaaccaagaatataacttcaccacatgatttgagtgtagtatatatatgtctcactttctcgga |
2787302 |
T |
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| Q |
118 |
tcggtatttccatttgagaattatcaacaaaatccacacaaaaaaggaaacttttagaaaaaatgactacaaattcaagcactactattcatagctaccc |
217 |
Q |
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| T |
2787303 |
tcggtatttccatttgagaattatcaacaaaatccacacaaaaaaggaaactttcagaaaaaatgactacaaattctagcactactattcatagctaccc |
2787402 |
T |
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| Q |
218 |
catcaaaacggtggtcattttggttcaagagaaccgttcttttgaccacatgttgggttggatgaagtccctcaacccgaaaatcaacggtgttatcggt |
317 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2787403 |
catcaaaacagtggtcattttggttcaagagaaccgttcttttgaccacatgttgggttggatgaagtccctcaacccgaaaatcaacggtgttatcggt |
2787502 |
T |
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| Q |
318 |
acagagtcaaactcaatctccacatctgattccaactccaaccgggttc |
366 |
Q |
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| T |
2787503 |
acagagtcaaactcaatctccacatctgattccaactcgaaccgagttc |
2787551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 2826678 - 2826904
Alignment:
| Q |
18 |
cattatagtatattctttatgccttcctaagttgcttaaccaagaatataacttcaccacatgatttgagtgtagtatatatat----gtctcactttct |
113 |
Q |
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| T |
2826678 |
cattatagtatattctttatgccttcctaagttactgcaccaagaatataacttcaccacatgatttgagtgtagtatatatatatatgtctcactttct |
2826777 |
T |
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| Q |
114 |
cggatcggtatttccatttgagaattatcaacaaaatccacacaaaaa----aggaaacttttagaaaaaatgactacaaattcaagcactactattcat |
209 |
Q |
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| T |
2826778 |
tggattggtattcccatttgagaattatcaacaaaatccacacaaaaacaaaaggaaattttca-agaaaatgacttcaaattctagcacta--attcat |
2826874 |
T |
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| Q |
210 |
agctaccccatcaaaacggtggtcattttg |
239 |
Q |
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| T |
2826875 |
agctatcccatcaaaacgttggtcattttg |
2826904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 96 - 225
Target Start/End: Original strand, 7362498 - 7362626
Alignment:
| Q |
96 |
atatatgtctcactttctcggatcggtatttccatttgagaattatcaacaaaatccacacaaaaaaggaaacttttagaaaaaatgactacaaattcaa |
195 |
Q |
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|||||||| ||||||||||| | |||||| |||||||||||||||||||||||| ||| |||||| ||| |||| | ||||||||| ||||||| | |
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| T |
7362498 |
atatatgtttcactttctcgaaatggtattcccatttgagaattatcaacaaaatttaca-taaaaagcaaaattttcaagaaaatgacttcaaattcta |
7362596 |
T |
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| Q |
196 |
gcactactattcatagctaccccatcaaaa |
225 |
Q |
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| T |
7362597 |
gcattactactcgtagctacaccatcaaaa |
7362626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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