View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3372_low_11 (Length: 354)

Name: NF3372_low_11
Description: NF3372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3372_low_11
NF3372_low_11
[»] scaffold0182 (2 HSPs)
scaffold0182 (11-343)||(24937-25267)
scaffold0182 (231-342)||(34378-34490)
[»] chr7 (13 HSPs)
chr7 (94-342)||(21763772-21764021)
chr7 (96-327)||(15713319-15713552)
chr7 (231-342)||(21771805-21771917)
chr7 (262-342)||(21628001-21628081)
chr7 (231-342)||(21725740-21725852)
chr7 (221-338)||(21740940-21741058)
chr7 (285-342)||(21704542-21704599)
chr7 (288-342)||(21651971-21652025)
chr7 (257-327)||(21808375-21808445)
chr7 (243-327)||(21681494-21681579)
chr7 (267-342)||(21714067-21714139)
chr7 (221-293)||(21788078-21788151)
chr7 (285-326)||(21992069-21992110)


Alignment Details
Target: scaffold0182 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 343
Target Start/End: Original strand, 24937 - 25267
Alignment:
Q  11 caaaggtaattgccgttggaagcgagcggggtatcaatgaacaatttcttaagttaaaagagtaattactctgccnnnnnnnngaaa----gagtaattt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||    |||||||||    
T  24937 caaaggtaattgccgttggaagcgagcggggtatcaatgaacaatttcttaagttaaaagagtaattactctgccaaaaaaaaaaaaaaaagagtaattt 25036  T
Q  107 tctcttgttcttatccctttcacatgtgttcctctttttcacctcagagccgtacccttcaattattagataaaggtgtgagtgagtgcatagaaaaaac 206  Q
    |||||||||||||||||||||||||||| | ||| ||||||||  |||||||||||||||| |||||||||||| |||||||||||||||| ||||||||    
T  25037 tctcttgttcttatccctttcacatgtggttctccttttcaccaaagagccgtacccttcacttattagataaatgtgtgagtgagtgcattgaaaaaac 25136  T
Q  207 tacagcattatcactgagtccataatatataatccgcattttgattcataatttcgtaactttgcaagatcaatatctctcaaccattagaatattgaat 306  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||      |||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  25137 tacagcactatcaccgagtccataatatataatccgcattttgat------tttcgtaactttgcaagatcaatatccctcaaccattagtgtattgaat 25230  T
Q  307 gaatgatggcaccccaaactattaaagaaaaatttga 343  Q
    ||||||||||| |||||||| ||||||||||| ||||    
T  25231 gaatgatggcagcccaaactcttaaagaaaaaattga 25267  T

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Target: scaffold0182; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 231 - 342
Target Start/End: Original strand, 34378 - 34490
Alignment:
Q  231 atatataatccgcattttgattcataatttcgt-aactttgcaagatcaatatctctcaaccattagaatattgaatgaatgatggcaccccaaactatt 329  Q
    ||||||||| ||||||||||||  || |||| | || ||||  |||||||| || |||||||||||  |||||||||||||||||||| || ||||||||    
T  34378 atatataatacgcattttgatttgtattttcatcaagtttgacagatcaatttccctcaaccattatcatattgaatgaatgatggcatccgaaactatt 34477  T
Q  330 aaagaaaaatttg 342  Q
    |||||||||||||    
T  34478 aaagaaaaatttg 34490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 94 - 342
Target Start/End: Original strand, 21763772 - 21764021
Alignment:
Q  94 gaaagagtaattttctcttgttcttatccctttcacatgtgttcctctttttcacctcagagccgtacccttcaattattagataaaggtgtgagtgagt 193  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21763772 gaaacagtaattttctcttgttcttatccctttcacatgtggtcctccttttcacctcagagccgtacccttcacttattagataaaggtgtgagtgagt 21763871  T
Q  194 gcatag-aaaaaactacagcattatcactgagtccataatatataatccgcattttgattcataatttcgtaactttgcaagatcaatatctctcaacca 292  Q
    |||| | |||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||    
T  21763872 gcatggcaaaaaactacagcactatcactgagtccataatatataatccgcattttcattcatgatttcgtaactttgcaagatcaatatccctcaacca 21763971  T
Q  293 ttagaatattgaatgaatgatggcaccccaaactattaaagaaaaatttg 342  Q
    ||||  ||||||||||||||||||| |||||||| |||||||||||||||    
T  21763972 ttagtgtattgaatgaatgatggcatcccaaactcttaaagaaaaatttg 21764021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 96 - 327
Target Start/End: Original strand, 15713319 - 15713552
Alignment:
Q  96 aagagtaattttctcttgttcttatccctttcacatgtgttcctctttttcacctcagagccgtacccttcaattat---------tagataaaggtgtg 186  Q
    |||||||||||||| ||||||||||| | ||||| |||| |||||||||  || |||||||||||||||||| ||||         ||| ||||||||||    
T  15713319 aagagtaattttct-ttgttcttatctccttcacgtgtggtcctctttta-acttcagagccgtacccttcatttataaggttcattaggtaaaggtgtg 15713416  T
Q  187 agtgagtgcatagaaaaaactacagcattatcactgagtccataatatataatccgcattttgattcataatttcgtaactttgcaagatcaatatctct 286  Q
      ||||||||| ||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  15713417 --tgagtgcat-gaaaaaactacagcactatcactgagtcca--atatataatccgcattttgattcataatttcgtgactttgcaagatcaatatccct 15713511  T
Q  287 caaccattagaatattgaatgaatgatggcaccccaaacta 327  Q
    ||||||| |  ||| |||||||||||||||| | |||||||    
T  15713512 caaccatgattataatgaatgaatgatggcatcgcaaacta 15713552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 231 - 342
Target Start/End: Original strand, 21771805 - 21771917
Alignment:
Q  231 atatataatccgcattttgattcataatttcgt-aactttgcaagatcaatatctctcaaccattagaatattgaatgaatgatggcaccccaaactatt 329  Q
    ||||||||| ||||||||||||  || |||| | || |||| |||||||||||| |||||||||||  |||||||||||||||||||| || ||||||||    
T  21771805 atatataatacgcattttgatttgtattttcatcaagtttgaaagatcaatatccctcaaccattatcatattgaatgaatgatggcatccgaaactatt 21771904  T
Q  330 aaagaaaaatttg 342  Q
    |||||||||||||    
T  21771905 aaagaaaaatttg 21771917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 262 - 342
Target Start/End: Original strand, 21628001 - 21628081
Alignment:
Q  262 gtaactttgcaagatcaatatctctcaaccattagaatattgaatgaatgatggcaccccaaactattaaagaaaaatttg 342  Q
    |||| |||| |||||||||||  |||||||||||  |||||||| ||||||||||| ||||||||||||||||||||||||    
T  21628001 gtaagtttgaaagatcaatattcctcaaccattattatattgaaagaatgatggcatcccaaactattaaagaaaaatttg 21628081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 231 - 342
Target Start/End: Original strand, 21725740 - 21725852
Alignment:
Q  231 atatataatccgcattttgattcataatttcgt-aactttgcaagatcaatatctctcaaccattagaatattgaatgaatgatggcaccccaaactatt 329  Q
    ||||||||| ||||||||||||  || |||| | || ||||  |||||||| || |||||||||||  |||||||||||||||||||| || ||||||||    
T  21725740 atatataatacgcattttgatttgtattttcatcaagtttgacagatcaatttccctcaaccattatcatattgaatgaatgatggcatccgaaactatt 21725839  T
Q  330 aaagaaaaatttg 342  Q
    |||||||||||||    
T  21725840 aaagaaaaatttg 21725852  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 221 - 338
Target Start/End: Original strand, 21740940 - 21741058
Alignment:
Q  221 tgagtccataatatataatccgcattttgattcataatttcgt-aactttgcaagatcaatatctctcaaccattagaatattgaatgaatgatggcacc 319  Q
    |||| ||||| |||||||  | |||||| ||| ||| |||||| || |||| | |||||||||  |||||||||||  |||||||||||||||||||| |    
T  21740940 tgagcccatattatataacacacattttaatttatattttcgttaagtttgaaggatcaatattcctcaaccattattatattgaatgaatgatggcatc 21741039  T
Q  320 ccaaactattaaagaaaaa 338  Q
    |||||||||||||||||||    
T  21741040 ccaaactattaaagaaaaa 21741058  T

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Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 285 - 342
Target Start/End: Original strand, 21704542 - 21704599
Alignment:
Q  285 ctcaaccattagaatattgaatgaatgatggcaccccaaactattaaagaaaaatttg 342  Q
    |||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||    
T  21704542 ctcaaccattattatattgaatgaatgatggcatcccaaactattaaagaaaaatttg 21704599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 342
Target Start/End: Original strand, 21651971 - 21652025
Alignment:
Q  288 aaccattagaatattgaatgaatgatggcaccccaaactattaaagaaaaatttg 342  Q
    ||||||||  ||||||| |||||||||||| ||||||||||||||||||||||||    
T  21651971 aaccattattatattgattgaatgatggcatcccaaactattaaagaaaaatttg 21652025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 327
Target Start/End: Complemental strand, 21808445 - 21808375
Alignment:
Q  257 atttcgtaactttgcaagatcaatatctctcaaccattagaatattgaatgaatgatggcaccccaaacta 327  Q
    ||||||| ||||||||||||||||||  |||| ||||||  |||||||||||||||||| | |||||||||    
T  21808445 atttcgttactttgcaagatcaatattcctcagccattattatattgaatgaatgatggaatcccaaacta 21808375  T

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Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 327
Target Start/End: Original strand, 21681494 - 21681579
Alignment:
Q  243 cattttgattcataatttcgt-aactttgcaagatcaatatctctcaaccattagaatattgaatgaatgatggcaccccaaacta 327  Q
    |||||||||| |||||||||| || |||| |||||||||||  |||||||||||  | ||||||||||||||| || |||||||||    
T  21681494 cattttgatttataatttcgttaagtttgaaagatcaatattcctcaaccattattacattgaatgaatgatgtcatcccaaacta 21681579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 342
Target Start/End: Original strand, 21714067 - 21714139
Alignment:
Q  267 tttgcaagatcaatatctctcaaccattagaatattgaatgaatgatggcaccccaaactattaaagaaaaatttg 342  Q
    |||| |||||||||||| |||||  ||||   ||||||||||| ||||||| ||||||||||||||||||||||||    
T  21714067 tttgaaagatcaatatccctcaaatatta---tattgaatgaaggatggcatcccaaactattaaagaaaaatttg 21714139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 21788078 - 21788151
Alignment:
Q  221 tgagtccataatatataatccgcattttgattcataatttcgt-aactttgcaagatcaatatctctcaaccat 293  Q
    |||| ||||| |||||||| | |||||||||| | | |||||| || |||| ||||||||||||||||||||||    
T  21788078 tgagcccatattatataatacacattttgatttacattttcgttaagtttgaaagatcaatatctctcaaccat 21788151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 21992069 - 21992110
Alignment:
Q  285 ctcaaccattagaatattgaatgaatgatggcaccccaaact 326  Q
    |||||||||||  |||||||||||||||||||| ||||||||    
T  21992069 ctcaaccattattatattgaatgaatgatggcatcccaaact 21992110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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