View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3372_low_13 (Length: 345)

Name: NF3372_low_13
Description: NF3372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3372_low_13
NF3372_low_13
[»] chr8 (9 HSPs)
chr8 (9-308)||(35355101-35355400)
chr8 (170-237)||(31711495-31711561)
chr8 (199-245)||(3093974-3094020)
chr8 (197-246)||(38501509-38501558)
chr8 (170-237)||(4586758-4586825)
chr8 (170-237)||(7680836-7680903)
chr8 (198-284)||(31824284-31824370)
chr8 (199-237)||(33590129-33590167)
chr8 (198-235)||(14532452-14532489)
[»] chr7 (6 HSPs)
chr7 (170-239)||(8062899-8062968)
chr7 (163-271)||(39608578-39608686)
chr7 (163-237)||(38838677-38838751)
chr7 (163-194)||(10228533-10228564)
chr7 (198-247)||(46720038-46720087)
chr7 (199-235)||(25688992-25689028)
[»] chr4 (10 HSPs)
chr4 (170-239)||(35255492-35255561)
chr4 (170-237)||(51151051-51151119)
chr4 (163-234)||(32933966-32934036)
chr4 (183-234)||(46805050-46805101)
chr4 (163-234)||(56095235-56095306)
chr4 (199-237)||(1758497-1758535)
chr4 (162-235)||(7010471-7010544)
chr4 (168-249)||(37687255-37687336)
chr4 (201-237)||(46216980-46217016)
chr4 (203-235)||(47097342-47097374)
[»] chr1 (6 HSPs)
chr1 (159-237)||(35621592-35621670)
chr1 (168-267)||(5529612-5529711)
chr1 (211-273)||(8234310-8234372)
chr1 (172-266)||(45679514-45679608)
chr1 (199-236)||(9890730-9890767)
chr1 (203-247)||(29795281-29795325)
[»] chr2 (7 HSPs)
chr2 (181-237)||(7165777-7165833)
chr2 (170-237)||(4877155-4877221)
chr2 (181-273)||(34883917-34884009)
chr2 (198-247)||(6686772-6686821)
chr2 (163-216)||(20167644-20167697)
chr2 (203-236)||(20966057-20966090)
chr2 (163-247)||(13478791-13478875)
[»] chr5 (9 HSPs)
chr5 (163-234)||(22391694-22391765)
chr5 (198-267)||(37181088-37181156)
chr5 (218-287)||(37853434-37853503)
chr5 (200-247)||(19342537-19342584)
chr5 (198-237)||(27001417-27001456)
chr5 (163-237)||(16127051-16127125)
chr5 (201-245)||(6645701-6645745)
chr5 (212-307)||(16722863-16722959)
chr5 (199-231)||(31949317-31949349)
[»] chr3 (2 HSPs)
chr3 (203-239)||(4136549-4136585)
chr3 (199-247)||(31186677-31186725)
[»] chr6 (2 HSPs)
chr6 (203-249)||(12291650-12291696)
chr6 (197-245)||(17848681-17848729)


Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 308
Target Start/End: Original strand, 35355101 - 35355400
Alignment:
Q  9 aagaagaaaaatagagtacatacaagaaaacaggaacaattggagaagaacagaacaacaataaaataaatactaaggtttttgtagtgtctcgtgagag 108  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35355101 aagaagaaaaatagagtacatacaagaaaacaggaacaattagagaagaacagaacaacaataaaataaatactaaggtttttgtagtgtctcgtgagag 35355200  T
Q  109 tgaaggtaacttgtgtaaaggtataaagaaaccattaatcaataagtcgaagagaataatcattttggtctttaaatgtgtaacgacatgtcacaatagt 208  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| || ||| ||||||||||  ||||||| ||||||    
T  35355201 tgaaggtaacttgtgtaaagttataaagaaaccattaattaataagtcgaagagaataatcattttagtatttgaatgtgtaacagcatgtcataatagt 35355300  T
Q  209 ctctcaatatattaaaattttaaaatagtatttaattgtacgatctataagtcaaaataatctctaatattaaaatagtcttcaatgttaagaataactc 308  Q
    |||||||| |||| |||||||||||||||||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||| ||||||||||||||||    
T  35355301 ctctcaatgtattgaaattttaaaatagtatttaattgtatgatctgtaagttaaaatagtctctaatattaaaatagtcttcgatgttaagaataactc 35355400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 31711561 - 31711495
Alignment:
Q  170 attttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagt 237  Q
    |||||||||||||||||| ||||||  |||||||||||||| | ||| || |||||||||||||||||    
T  31711561 attttggtctttaaatgtataacgagttgtcacaatagtctattaatcta-taaaattttaaaatagt 31711495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 3094020 - 3093974
Alignment:
Q  199 tcacaatagtctctcaatatattaaaattttaaaatagtatttaatt 245  Q
    |||||||||||| ||||||||| |||||||||||||||| |||||||    
T  3094020 tcacaatagtctttcaatatatcaaaattttaaaatagtctttaatt 3093974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 38501558 - 38501509
Alignment:
Q  197 tgtcacaatagtctctcaatatattaaaattttaaaatagtatttaattg 246  Q
    |||||||||||||| ||||||||  |||||| ||||||||||||||||||    
T  38501558 tgtcacaatagtctttcaatataacaaaattataaaatagtatttaattg 38501509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 4586758 - 4586825
Alignment:
Q  170 attttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagt 237  Q
    |||||| || || ||||||||||||   || |||||||||||| ||| ||||||||||||||||||||    
T  4586758 attttgatccttgaatgtgtaacgagtagttacaatagtctcttaatgtattaaaattttaaaatagt 4586825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 7680836 - 7680903
Alignment:
Q  170 attttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagt 237  Q
    |||||||||  ||||||| ||||||    |||||||| ||||||||||||||||||||| ||||||||    
T  7680836 attttggtccataaatgtctaacgagtaatcacaatactctctcaatatattaaaatttaaaaatagt 7680903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 284
Target Start/End: Complemental strand, 31824370 - 31824284
Alignment:
Q  198 gtcacaatagtctctcaatatattaaaattttaaaatagtatttaattgtacgatctataagtcaaaataatctctaatattaaaat 284  Q
    ||||||||||||  | ||||||| |||||||||||||| |||||  ||||| | | ||| |||||||||| ||| | ||||||||||    
T  31824370 gtcacaatagtcctttaatatatcaaaattttaaaataatatttgtttgtatgttatattagtcaaaatagtcttttatattaaaat 31824284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 33590129 - 33590167
Alignment:
Q  199 tcacaatagtctctcaatatattaaaattttaaaatagt 237  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  33590129 tcacaatagtctctcaatgtattaaaattgtaaaatagt 33590167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 14532489 - 14532452
Alignment:
Q  198 gtcacaatagtctctcaatatattaaaattttaaaata 235  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  14532489 gtcacaatagtctcttaatatatcaaaattttaaaata 14532452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 8062968 - 8062899
Alignment:
Q  170 attttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagtat 239  Q
    ||||||||| || ||||||||||||   ||||||||||||| ||||| ||||||||||||||||||||||    
T  8062968 attttggtccttgaatgtgtaacgagtagtcacaatagtctgtcaatgtattaaaattttaaaatagtat 8062899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 163 - 271
Target Start/End: Complemental strand, 39608686 - 39608578
Alignment:
Q  163 aataatcattttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagtatttaattgtacgatctataagtca 262  Q
    |||||||||||| ||| || ||||||||| ||   || |||||||| | ||||| ||| |||||||||||||||| || |||||||| || | | |||||    
T  39608686 aataatcattttagtccttgaatgtgtaaggagtagttacaatagtttttcaatgtatcaaaattttaaaatagttttgaattgtacaatttgttagtca 39608587  T
Q  263 aaataatct 271  Q
    |||||||||    
T  39608586 aaataatct 39608578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 38838751 - 38838677
Alignment:
Q  163 aataatcattttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagt 237  Q
    |||||| |||||||||  | ||||||||||||   ||||||||| ||| ||||| ||||||||||||||||||||    
T  38838751 aataattattttggtccctgaatgtgtaacgagtagtcacaatattctatcaatgtattaaaattttaaaatagt 38838677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 194
Target Start/End: Original strand, 10228533 - 10228564
Alignment:
Q  163 aataatcattttggtctttaaatgtgtaacga 194  Q
    ||||||||||||||||||||||||||||||||    
T  10228533 aataatcattttggtctttaaatgtgtaacga 10228564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 46720087 - 46720038
Alignment:
Q  198 gtcacaatagtctctcaatatattaaaattttaaaatagtatttaattgt 247  Q
    |||||||||||| |||||| |||| |||||||||||| |||||| |||||    
T  46720087 gtcacaatagtccctcaatgtattgaaattttaaaatggtatttgattgt 46720038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 25688992 - 25689028
Alignment:
Q  199 tcacaatagtctctcaatatattaaaattttaaaata 235  Q
    |||||||||||||||||| |||||||||| |||||||    
T  25688992 tcacaatagtctctcaatgtattaaaattctaaaata 25689028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 35255561 - 35255492
Alignment:
Q  170 attttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagtat 239  Q
    |||||||||  ||||| ||||||||   ||||||||||||||||||| ||||||||||||||||||||||    
T  35255561 attttggtccctaaatatgtaacgagtagtcacaatagtctctcaatgtattaaaattttaaaatagtat 35255492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 51151119 - 51151051
Alignment:
Q  170 attttggtctttaaatgtgtaacgacatgtcacaatag-tctctcaatatattaaaattttaaaatagt 237  Q
    ||||||||| || ||||||||||||   |||||||||  ||||||||| ||||||||||||||||||||    
T  51151119 attttggtccttgaatgtgtaacgagtagtcacaataaatctctcaatgtattaaaattttaaaatagt 51151051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 32933966 - 32934036
Alignment:
Q  163 aataatcattttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaat 234  Q
    |||||| |||||||||| | ||||||||| ||   |||| |||| |||||||||||||||||||||||||||    
T  32933966 aataattattttggtctctgaatgtgtaatgagtagtcataata-tctctcaatatattaaaattttaaaat 32934036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 46805101 - 46805050
Alignment:
Q  183 aatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaat 234  Q
    ||||||||||||   |||| |||||||| |||||||||||||||||||||||    
T  46805101 aatgtgtaacgagtagtcataatagtctttcaatatattaaaattttaaaat 46805050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 56095306 - 56095235
Alignment:
Q  163 aataatcattttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaat 234  Q
    |||||| |||||||||  | ||||||||||||   ||||||||||| ||||| | |||||||||||||||||    
T  56095306 aataattattttggtcccttaatgtgtaacgagtagtcacaatagtatctcattgtattaaaattttaaaat 56095235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 1758535 - 1758497
Alignment:
Q  199 tcacaatagtctctcaatatattaaaattttaaaatagt 237  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  1758535 tcacaatagtctctcaatgtattaaaattttaagatagt 1758497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 7010544 - 7010471
Alignment:
Q  162 gaataatcattttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatatta-aaattttaaaata 235  Q
    ||||||| ||||| ||| ||||||||||||| | || |||||||||||||||||| ||| | |||||||||||||    
T  7010544 gaataattattttcgtccttaaatgtgtaac-aaatatcacaatagtctctcaatgtatcagaaattttaaaata 7010471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 249
Target Start/End: Complemental strand, 37687336 - 37687255
Alignment:
Q  168 tcattttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagtatttaattgtac 249  Q
    |||||||||||| | ||||| ||| ||   || |||||| | ||||||||||| |||||||||||||||| ||| |||||||    
T  37687336 tcattttggtctctgaatgtataatgattagttacaataatttctcaatatatcaaaattttaaaatagtttttgattgtac 37687255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 46216980 - 46217016
Alignment:
Q  201 acaatagtctctcaatatattaaaattttaaaatagt 237  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  46216980 acaatagtctctcaatgtatcaaaattttaaaatagt 46217016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 47097342 - 47097374
Alignment:
Q  203 aatagtctctcaatatattaaaattttaaaata 235  Q
    |||||||||||||| ||||||||||||||||||    
T  47097342 aatagtctctcaatgtattaaaattttaaaata 47097374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 35621670 - 35621592
Alignment:
Q  159 agagaataatcattttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagt 237  Q
    |||||||| |||||||| || |||||||||||||||  |||||||||||| | | ||| ||||||| ||||||||||||    
T  35621670 agagaatagtcattttgatccttaaatgtgtaacgagttgtcacaatagtttttaaatgtattaaatttttaaaatagt 35621592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 267
Target Start/End: Original strand, 5529612 - 5529711
Alignment:
Q  168 tcattttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagtatttaattgtacgatctataagtcaaaata 267  Q
    |||||||| ||||| ||||||||| ||  ||||||| |||||  ||||||||| ||| |||||||||||| | | ||||| |||| | | ||||||||||    
T  5529612 tcattttgctctttgaatgtgtaaggagttgtcacagtagtccttcaatatatcaaagttttaaaatagtctctgattgtgcgatttgttagtcaaaata 5529711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 8234372 - 8234310
Alignment:
Q  211 ctcaatatattaaaattttaaaatagtatttaattgtacgatctataagtcaaaataatctct 273  Q
    |||||||||| |||||||||||||||| ||||||||| |  ||| | | ||||||||||||||    
T  8234372 ctcaatatatcaaaattttaaaatagtttttaattgtgcattctgttaatcaaaataatctct 8234310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 266
Target Start/End: Original strand, 45679514 - 45679608
Alignment:
Q  172 tttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagtatttaattgtacgatctataagtcaaaat 266  Q
    |||||||| | ||||||||||||   ||||||||| ||  ||||  |||||||||||||||||||| ||| ||||| |  ||||| |||||||||    
T  45679514 tttggtctctgaatgtgtaacgagtagtcacaataatccatcaacgtattaaaattttaaaatagtttttgattgtgcactctattagtcaaaat 45679608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 9890767 - 9890730
Alignment:
Q  199 tcacaatagtctctcaatatattaaaattttaaaatag 236  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  9890767 tcacaatagtctctcaatgtattaaaattctaaaatag 9890730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 29795325 - 29795281
Alignment:
Q  203 aatagtctctcaatatattaaaattttaaaatagtatttaattgt 247  Q
    |||||||| | ||||||| |||||||||||||||||||| |||||    
T  29795325 aatagtcttttaatatatcaaaattttaaaatagtatttgattgt 29795281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 7165833 - 7165777
Alignment:
Q  181 taaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagt 237  Q
    ||||||||||||||   ||||||||||||| ||||| ||||||||||||||||||||    
T  7165833 taaatgtgtaacgagtagtcacaatagtctttcaatgtattaaaattttaaaatagt 7165777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 4877221 - 4877155
Alignment:
Q  170 attttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagt 237  Q
    |||||||||||||||||| ||||||  |||||||||||||| | ||| || |||||||||||||||||    
T  4877221 attttggtctttaaatgtataacgagttgtcacaatagtctattaatcta-taaaattttaaaatagt 4877155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 34883917 - 34884009
Alignment:
Q  181 taaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagtatttaattgtacgatctataagtcaaaataatctct 273  Q
    ||||||||||| | |  |||||||||||| |||||| ||| |||||||||||||||| | ||||||| |  ||| | |||||||||| |||||    
T  34883917 taaatgtgtaatggccggtcacaatagtccctcaatgtatcaaaattttaaaatagtctctaattgtgcactctgttagtcaaaatagtctct 34884009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 6686772 - 6686821
Alignment:
Q  198 gtcacaatagtctctcaatatattaaaattttaaaatagtatttaattgt 247  Q
    |||| |||||| ||||||||||| |||||||||||||||| ||| |||||    
T  6686772 gtcaaaatagtttctcaatatatcaaaattttaaaatagtttttgattgt 6686821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 20167697 - 20167644
Alignment:
Q  163 aataatcattttggtctttaaatgtgtaacgacatgtcacaatagtctctcaat 216  Q
    |||| ||||||||||||||||||||||||| |   |||||||||||| ||||||    
T  20167697 aatagtcattttggtctttaaatgtgtaacaagtagtcacaatagtcactcaat 20167644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 20966057 - 20966090
Alignment:
Q  203 aatagtctctcaatatattaaaattttaaaatag 236  Q
    |||||||||||||| |||||||||||||||||||    
T  20966057 aatagtctctcaatctattaaaattttaaaatag 20966090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 13478875 - 13478791
Alignment:
Q  163 aataatcattttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagtatttaattgt 247  Q
    ||||||||||||  ||||||||| ||||| ||   || |||||| ||| | ||||||| |||||||||||||||| ||| |||||    
T  13478875 aataatcattttaatctttaaatatgtaatgaatagtaacaataatctttgaatatatcaaaattttaaaatagtttttgattgt 13478791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 22391694 - 22391765
Alignment:
Q  163 aataatcattttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaat 234  Q
    ||||||||| ||| || |||||||||||||||   |||| |||||||| ||||||||| |||||||||||||    
T  22391694 aataatcatattgatccttaaatgtgtaacgaatagtcataatagtctttcaatatatcaaaattttaaaat 22391765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 37181088 - 37181156
Alignment:
Q  198 gtcacaatagtctctcaatatattaaaattttaaaatagtatttaattgtacgatctataagtcaaaata 267  Q
    |||| |||||||||| |||||||||||||||||||| ||| ||||||||| | |||| | ||||||||||    
T  37181088 gtcataatagtctcttaatatattaaaattttaaaa-agtctttaattgtgcaatctgttagtcaaaata 37181156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 287
Target Start/End: Complemental strand, 37853503 - 37853434
Alignment:
Q  218 tattaaaattttaaaatagtatttaattgtacgatctataagtcaaaataatctctaatattaaaatagt 287  Q
    |||||||||||||||||||| ||||||||||   | | | |||||||||| ||||||| |||||||||||    
T  37853503 tattaaaattttaaaatagtttttaattgtatactttgttagtcaaaatagtctctaacattaaaatagt 37853434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 19342584 - 19342537
Alignment:
Q  200 cacaatagtctctcaatatattaaaattttaaaatagtatttaattgt 247  Q
    ||||||| ||| |||||||||||||||||||||||||| ||| |||||    
T  19342584 cacaataatctatcaatatattaaaattttaaaatagtttttgattgt 19342537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 237
Target Start/End: Complemental strand, 27001456 - 27001417
Alignment:
Q  198 gtcacaatagtctctcaatatattaaaattttaaaatagt 237  Q
    |||||||||||||||| |||||| ||||||||||||||||    
T  27001456 gtcacaatagtctctcgatatatcaaaattttaaaatagt 27001417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 16127051 - 16127125
Alignment:
Q  163 aataatcattttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagt 237  Q
    |||| |||||||||||  ||||||||||| ||   ||||||||||||||||||  ||| ||||||| ||||||||    
T  16127051 aatagtcattttggtccctaaatgtgtaaggagtagtcacaatagtctctcaaagtatcaaaatttcaaaatagt 16127125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 6645701 - 6645745
Alignment:
Q  201 acaatagtctctcaatatattaaaattttaaaatagtatttaatt 245  Q
    |||||||||| ||||| ||| |||||||||||||||| |||||||    
T  6645701 acaatagtctatcaatgtatcaaaattttaaaatagtctttaatt 6645745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 307
Target Start/End: Original strand, 16722863 - 16722959
Alignment:
Q  212 tcaatatattaaaattttaaaatagtatttaattgtacgatctataagtcaaaataatctctaatattaaaatag-tcttcaatgttaagaataact 307  Q
    |||||||||| ||| ||||||||| ||  | ||||| |  ||||| | ||||||||||||||||||||||| ||| || |||| ||||| |||||||    
T  16722863 tcaatatattgaaactttaaaataatacatgattgtgcactctattaatcaaaataatctctaatattaaagtagttcatcaacgttaacaataact 16722959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 31949349 - 31949317
Alignment:
Q  199 tcacaatagtctctcaatatattaaaattttaa 231  Q
    |||||||||||||| ||||||||||||||||||    
T  31949349 tcacaatagtctcttaatatattaaaattttaa 31949317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 4136549 - 4136585
Alignment:
Q  203 aatagtctctcaatatattaaaattttaaaatagtat 239  Q
    |||||||| ||||||||||||||||||||||||||||    
T  4136549 aatagtctttcaatatattaaaattttaaaatagtat 4136585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 31186725 - 31186677
Alignment:
Q  199 tcacaatagtctctcaatatattaaaattttaaaatagtatttaattgt 247  Q
    ||||||||||||||  |||||| |||||||||||||||| ||| |||||    
T  31186725 tcacaatagtctcttgatatatcaaaattttaaaatagtttttgattgt 31186677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 12291696 - 12291650
Alignment:
Q  203 aatagtctctcaatatattaaaattttaaaatagtatttaattgtac 249  Q
    ||||||| |||||| |||||||||||||||||||| ||| |||||||    
T  12291696 aatagtccctcaatgtattaaaattttaaaatagtctttgattgtac 12291650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 17848681 - 17848729
Alignment:
Q  197 tgtcacaatagtctctcaatatattaaaattttaaaatagtatttaatt 245  Q
    |||||| ||||||||| ||| ||||||||||||||| |||| |||||||    
T  17848681 tgtcacgatagtctctaaatgtattaaaattttaaattagtttttaatt 17848729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University