View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3372_low_15 (Length: 319)
Name: NF3372_low_15
Description: NF3372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3372_low_15 |
 | |
|
| [»] scaffold0329 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 2 - 310
Target Start/End: Complemental strand, 35150364 - 35150053
Alignment:
| Q |
2 |
atcaaaaacacatttatttatggattgaaattgatttaatttcgatagcacagaacaaattaaagaataatagtcagataatattttgaatgatattatg |
101 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35150364 |
atcaaaaacacattcatttatggattgaaattgatttaatttcgatagcatagaacaaattaaagaataatagtcagataatattttgaatgatattatg |
35150265 |
T |
|
| Q |
102 |
tccatctacaaccttacaaaggcattgtttgatgttaggacccacatttttgtctt---ctcaaaattatatcctccataactcataccatcttgtctat |
198 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35150264 |
tccatctacaaccttacaaaggcattttttgatgttaggacccacatttttgtcttctcctcaaaattatatcctccataactcataccatcttgtctat |
35150165 |
T |
|
| Q |
199 |
aaccatccaacacaccatcaactaacttgatgaagccttatgtttctctccatttagccaaacaaccgaaaatgtgatgttgttacaaggacttctgagt |
298 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35150164 |
aaccctccaacacaccatcaactaatttgatgaagccttatgtttctctccatttagccaaacaactgaaaatgtgatgttgttacaaggacttctgagt |
35150065 |
T |
|
| Q |
299 |
cccagacctatg |
310 |
Q |
| |
|
|||||||||||| |
|
|
| T |
35150064 |
cccagacctatg |
35150053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 35128080 - 35128044
Alignment:
| Q |
191 |
ttgtctataaccatccaacacaccatcaactaacttg |
227 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
35128080 |
ttgtctataaccatccaacacgccattaactaacttg |
35128044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 17081 - 17024
Alignment:
| Q |
100 |
tgtccatctacaaccttacaaaggcattgtttgatgttaggacccacatttttgtctt |
157 |
Q |
| |
|
|||||||| |||| ||||| |||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
17081 |
tgtccatcaacaatcttacgaaggcattgtttaatgttaggacccatctttttgtctt |
17024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 19283585 - 19283642
Alignment:
| Q |
100 |
tgtccatctacaaccttacaaaggcattgtttgatgttaggacccacatttttgtctt |
157 |
Q |
| |
|
|||||||| |||||||||| ||| ||||||||||| |||||||||| |||||||||| |
|
|
| T |
19283585 |
tgtccatcaacaaccttacgaagacattgtttgatattaggacccatctttttgtctt |
19283642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 49348 - 49396
Alignment:
| Q |
244 |
ctctccatttagccaaacaaccgaaaatgtgatgttgttacaaggactt |
292 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||| ||||| ||||||||| |
|
|
| T |
49348 |
ctctccatttagccaagcaaccaaaaatgtgatattgttgcaaggactt |
49396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University