View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3372_low_17 (Length: 307)
Name: NF3372_low_17
Description: NF3372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3372_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 43093971 - 43094250
Alignment:
| Q |
18 |
cgaattagacaaacaaatgaacaaaatagaacaaaggagatgatattatatgagggtcgttcggtgaaagaagctgaaaaccaggtccaataggtacaaa |
117 |
Q |
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| T |
43093971 |
cgaattaaacaaacaaatgaacaaaatagaacaaaggagatgatattatatgagggtcgttcggtgaaagaagctgaaaaccaggtccaataggtacaaa |
43094070 |
T |
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| Q |
118 |
ctttttaatatcgaaacatgtttaattgttccctnnnnnnnnttatgtttaattgtcgtgcatatataactttttagcacaaaaataagatttctgatca |
217 |
Q |
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| T |
43094071 |
gtttttaatatcgaaacatgtttaattattccctaaaaaaaaa-atgtttaattgtcgtgcatatacaactttttagcacaaaaataagatttctgatca |
43094169 |
T |
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| Q |
218 |
tgagtgtatgctaaatattataattagaaggctgtcgtttggattagggaacgtgttagtgaacttaaatggtatgatgat |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
43094170 |
tgagtgtatgctaaatattataattagaaggctgtcgtttggattagggaacgtgttagtgaacttaaatagtaggatgat |
43094250 |
T |
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