View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3372_low_2 (Length: 643)
Name: NF3372_low_2
Description: NF3372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3372_low_2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 326 - 643
Target Start/End: Complemental strand, 10752121 - 10751799
Alignment:
| Q |
326 |
atattcattgattgtagatatgctttact-----atctattaagtgtgctaatcaaactctggaagtgaaaaatgtgtagacaaaataatcaggctgtta |
420 |
Q |
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| T |
10752121 |
atattcattgattgtagatatgctttactttaccatctatgaagtgtgctaatcaaactctggaagtgaaaaatgtgtagacaaaataatcaggccgtta |
10752022 |
T |
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| Q |
421 |
aactaaactactcaaaattttatgtcagaagcagaaaattaaatatgacccttgcaatcatagatatgattggtgccatagcttattgtttgaagacttg |
520 |
Q |
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| T |
10752021 |
aactaaactactcaaaattttatgtcagaagcagaaaattaaatatgacccttgcaatcatagatatgattggtgccatagcttattgtttgaagacttg |
10751922 |
T |
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| Q |
521 |
attcagacatatttgtaatccatctcattgcaccatttgattcaccttgtatattgtatgcataagaaggccatcttacatcagcttcgcacatgctcgc |
620 |
Q |
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| T |
10751921 |
attcagacatatttgtaatccatctcattgcaccatttgattcaccttgtatattgtatgcataagaaggccatcttacatcagcttcgcacatgctcgc |
10751822 |
T |
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| Q |
621 |
aacactcattccgatcatcttct |
643 |
Q |
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| T |
10751821 |
gacactcattccgatcatcttct |
10751799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 10752424 - 10752170
Alignment:
| Q |
21 |
cacgtgctcccccttcctaatccatgttagggctacaactcaaagcagttcaatttcacctattatattaatttatttatttattcataggtacatgatt |
120 |
Q |
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| T |
10752424 |
cacgtgctcccccttcctaatccatgttagggctacaactcaaagcagttcaatttcacctattagattaatttatttatttattcataggtacatgatt |
10752325 |
T |
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| Q |
121 |
ctacttgcttgaaacctaaaactaaggatggatgcattctggagtatgcaaattcaaaagaccagaaagtcatttctaaatttggaatttacactgcagc |
220 |
Q |
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| T |
10752324 |
ctacttgcttgaaacctaaaactaaggatggatgcattctggagtatgcaaattcaaaagaccagaaagtcatttctaaatttggaatttacactgcagc |
10752225 |
T |
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| Q |
221 |
attcctgacactgtcaacgagaccacaatcacactgtctttacatatttaaggac |
275 |
Q |
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| T |
10752224 |
attcctgacactgtcaacgagaccacaatcacactgtctttacatatttaaggac |
10752170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 493 - 603
Target Start/End: Complemental strand, 32561396 - 32561286
Alignment:
| Q |
493 |
gtgccatagcttattgtttgaagacttgattcagacatatttgtaatccatctcattgcaccatttgattcaccttgtatattgtatgcataagaaggcc |
592 |
Q |
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||||||||||| || | ||||| ||||| |||||||||||||||| ||||||||| | |||||| |||| |||| |||||| |||||| ||||||||| |
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| T |
32561396 |
gtgccatagctgatagcatgaaggcttgaatcagacatatttgtaacccatctcataggaccattcaattctccttttatattatatgcaaaagaaggcc |
32561297 |
T |
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| Q |
593 |
atcttacatca |
603 |
Q |
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| T |
32561296 |
atcttacatca |
32561286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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