View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3372_low_21 (Length: 284)
Name: NF3372_low_21
Description: NF3372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3372_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 3454147 - 3454407
Alignment:
| Q |
19 |
acaacgtatccacactgttgtttcaattgaatgagtttgttcttcagtgtcat---cattcattgagcattcactgttaactgaagatctacattcattg |
115 |
Q |
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| T |
3454147 |
acaacgtatccacactgttgtttcaattgaatgagtttgttcttcagtatcatcatcattcattgagcattcactgttaactgaagatctgcattcattg |
3454246 |
T |
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| Q |
116 |
ctaaacgcatgattctggataggatggtcagcgtgttttctatcatcaataagattttgatcacatctcatacttcttggtgatggtgtatgtttatctt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3454247 |
ctaaacgcatgattctggataggatggtcagcgtgttttctatcatcgataagattttgatcacatctcatacttcttggtgatggtgtatgtttatctt |
3454346 |
T |
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| Q |
216 |
ccttcaatccatttgctgaaatagttgactggtcttctgtgaccttttggtgatattcttc |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3454347 |
ccttcaatccatttgctgaaatagttgactggtcttctgtgaccttttggtgagattcttc |
3454407 |
T |
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